Array 1 1806293-1807113 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHR01000013.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL04158 2015LSAL04158_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1806293 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 1806354 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 1806415 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 1806476 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 1806537 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 1806598 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 1806659 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 1806720 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 1806781 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 1806842 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 1806903 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 1806964 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 1807025 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1807086 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1823754-1825614 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHR01000013.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL04158 2015LSAL04158_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1823754 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 1823815 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 1823877 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 1823938 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 1823999 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 1824060 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 1824121 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 1824182 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 1824243 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 1824304 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 1824365 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1824426 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 1824487 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 1824548 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 1824609 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 1824670 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 1824731 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 1824792 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 1824853 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 1824914 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 1824975 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 1825036 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 1825097 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 1825158 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 1825219 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 1825280 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 1825341 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 1825402 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1825463 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1825524 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1825585 29 93.1 0 A...........T................ | A [1825611] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //