Array 1 105094-106857 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN909042.1 Paenibacillus senegalimassiliensis strain SIT18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 105094 32 100.0 33 ................................ ACCATTTCGCAAGTTTGATCATCGTTAAACACC 105159 32 100.0 34 ................................ CCCGCGCCGCAGTTGTAGCAAAAGCTCACAAGCA 105225 32 100.0 36 ................................ CCCACTTGAGGTTAAAGTCATCGGCAATCTGCTTCA 105293 32 100.0 35 ................................ AGCGCATCCTTGACGCCTTTGAGATAATTGTCCAC 105360 32 100.0 34 ................................ CATGATGGCTGCTGGTGGAGCTGCCTATGGTGGC 105426 32 100.0 34 ................................ AGTTGATTCCCGAATCAATTTCAATTGGCCTTTA 105492 32 100.0 33 ................................ TTTAGGACATTTCCAATGGGGAGAACCAGCAAT 105557 32 100.0 33 ................................ TGCTGACACTAACAAGCAAAACGAACTAATTCA 105622 32 100.0 36 ................................ CATGCTCGGGGCCGTTGCGAGCGCAAGCAGCAGCGA 105690 32 100.0 33 ................................ ATATGTCGTTAATAGCTTTTTTCCGAGTTTGAA 105755 32 100.0 34 ................................ ATATTGCAGTTCAGTTGCATTGTTATTGATAATC 105821 32 100.0 36 ................................ TAATTTCTAATTACGATTTATCGTATCGCAATTACC 105889 32 100.0 37 ................................ GCAAGCTCGTGGAGCTGGACAAGCAATCGGACACCGA 105958 32 100.0 34 ................................ GGGGTATCCCTACCCATCTTAACCGGAGAATTCG 106024 32 100.0 35 ................................ TTCCACGACTTCATAAACGCTTTGATATCCTCCAA 106091 32 100.0 36 ................................ ATAAAGCTGGCCTGGCTAATAGTCCGCTGGCCGCTG 106159 32 100.0 35 ................................ AGGGGCTACCTTGGCCGAGGTTGAATCTCAAATTG 106226 32 100.0 34 ................................ ACCGCCCACAGCCAAGGTGTCAAACATCTCATTT 106292 32 100.0 37 ................................ GCAGAGTGAGGAAACCAACCCGGATGATGCTGATATC 106361 32 100.0 33 ................................ AAAATATTGGGACGATCAACTGAAAAGGTTAAC 106426 32 100.0 34 ................................ TTGGATGTTTATGTATCACCGGCTCAACGTAGCC 106492 32 100.0 36 ................................ GGGCCATAGCCCGGATGCCGGACACCGATACATCCC 106560 32 100.0 36 ................................ TACAAGTCTATCGACAAAATAAAAGCCCGCTCACCA 106628 32 100.0 36 ................................ AGCTCGGTTAGCCTTGATCGATGGAAAAAGGAAGAA 106696 32 100.0 33 ................................ TGGCAGCACAATGTAATAGGAAGAAACATCCCT 106761 32 93.8 34 ...........T.......T............ CTCGGCACCCCAATGCTGATCATCAACAATTGGG 106827 31 75.0 0 ............A......TA.-C.A.C..T. | ========== ====== ====== ====== ================================ ===================================== ================== 27 32 98.8 35 GTCGCACCTTACGCAGGTGCGTGGATTGAAAT # Left flank : TATGAGTTTAAATGTAAAGTCAATTTTTAACTTTATAGAGTTAATCGATGCAATCTCAGGGAACTGTATTTTTAAATGATAAACATTATGGAGGTGCAACAATGATTAAATGCTATTTAAGAGAACTTATGGCAGAACATCGAATAGATGATATTACCGAGTTGATGGTCAAATCTGGATTAAGCCGAAATTCAATTAATAAGTTATACAGGGAAACGAATATAGAAACAACTAAGCTGGAGACCCTAATTAAGTTATGCGATACCTTTAATTGCAAGTTATCTGATTTAATTGAATATGTACCGGAAGAGTAGTAGCCGTAATTTATACTGGTGCGAATGTGAAGCGAACACGATTTCCCTGGGAGATTCGCACCAAAATAAGTTACTTTCATTTTAATTTATGTAATTAAAAGGTAATAAAAAGATGATTTCTAGCAGCGATAGGTGAACAGGAGGCTGTTTATGCCTGGAAATATCCTTAATCTGTTAAAAATCGGA # Right flank : TTAAGGCATGCACCGCCACCCCTCAAAATTAGTAACGTCAAGCTCCCCTTGGACAGACGTGTCCATCAAAATTTCTTTCTGCAGAAGTATAGAGTCAAGCCCTCCCATCATCGGGAAGGCTTTTTGCTGTTCACATAAAACAACCCCACAAATCATAAAAAATGTTGAATCATGGAAGGGATTGGAGATTTTTCGGAGAAATACATGAATATAAGGAGATAGTTCTCAAGAACTACCCGAAAAGGGTTGGGAGGTCAGGTAGTTGGACTATATTGCACACGTGCGGGAAAGTGATGGGGAGCCACAGCCACTGGAGTATCACTTGCTAGGAGCCATGCGATTGGCTGAGTTCGCCGGGGAGCCACTTGGTATTCGGCATATTACGGGTCTGGCAGGTCTACTTCATGATCTCGGGAAATACGCGTTAGCATTTCAAGACTATTTGCGCGAAGCTGTAGCTCATCCGGAAGCTCCTGCTAAGCGGGGAAGTGTAGATCATT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 115304-116800 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN909042.1 Paenibacillus senegalimassiliensis strain SIT18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 115304 32 100.0 33 ................................ CCCACTCACGCAAAGCATCTGCAAGGACATCAT 115369 32 100.0 35 ................................ CATTCAGAGAGGTGAAAAACGGTGCCGCCCTTATT 115436 32 100.0 33 ................................ CTCCAGACTCCGTCTAATGCGGTCATATTCGGC 115501 32 100.0 35 ................................ AAACAAATCCCGCTCCAGCGCTTCAATCTTTGCAC 115568 32 100.0 37 ................................ CCAAACTCCGTTGACCTGCTGCTGAAGCTCGAGGGTA 115637 32 100.0 36 ................................ ATCTGCTCTGATCTTTACTTTTTGGAGATCGTATAA 115705 32 100.0 36 ................................ TTCCGGTTGACCTAGGTAGCTTTTTTCCTGATCCTC 115773 32 100.0 33 ................................ GCAATGGTGTTGGCTTTGATGAAATCGGGCTTG 115838 32 100.0 34 ................................ CCCGCGCCGCAGTTGTAGCAAAAGCTCACAAGCA 115904 32 100.0 36 ................................ CCTAAGTTTTCGGGAGACCAAGCCTTTGACTTATTG 115972 32 100.0 35 ................................ GTTGACACGCTGCTGAACTTTCTGTATCGCTGCTT 116039 32 100.0 33 ................................ TCCCGTACGTACTCGACATCATATGATAACAGC 116104 32 100.0 36 ................................ CCGCCTCCAATGCTACTAATAAAGCAGCACGGCAAA 116172 32 100.0 36 ................................ TCTAATAAGGTTAATGTAAGCATTAATGAAGTTATT 116240 32 100.0 33 ................................ ATGACGCAGGCTCAAGTCAATGCTTTGTATGTG 116305 32 100.0 34 ................................ TGTTCTTAGGGTCCGCTGTAATGATTGCACTTAC 116371 32 100.0 36 ................................ CATTTCCATCATCTCATCACCTCTTACGTCTTATAA 116439 32 100.0 34 ................................ GCTCCTGCGTTACTCCAAGATTAATAATCTCGTT 116505 32 100.0 35 ................................ ACTGAGGTATTTCGGGAGCAGGCTGCAGAGATAAG 116572 32 100.0 33 ................................ ACGACATCCGAGCCAAGTGTCGGCGACTCAAGA 116637 32 100.0 33 ................................ TGGGATCCATATTGATCAAGCCTGAAACCTTTG 116702 32 100.0 34 ................................ CAGTAGTAGTACACCTGGGCGTTAATCGTCAGTT G [116716] 116769 32 93.8 0 ..............A.........G....... | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 99.7 35 GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Left flank : AAGTAGGTGTGGATCATACTGGTACTTGTCACTTATGATGTAAGCACAACGGATTCGGCCGGACAGCGTAGATTACGACAGGTGGCCAAGACTTGCCTCAATTGTGGGCAACGGGTGCAAAATTCTGTGTTTGAATGCATCGTGGATGCCGCCGAATGGACATCCTTGAGACTACGTCTGCTAGAACTCATTGACCCGGAGCAGGATAGTATCCGCTTCTACCAATTGGGTAACCAGTACAAGAACAAGATAGAGCATGTGGGTACGAAATCATCCCTTGATTTGGAGGGTCCACTAATTCTCTAACGGCCAGAATAGCATAAAATGTGCTGGTGCGAATGTGAAGCGAACATGATTCCCCTAGGGGATTCGCACCAAAATAAGTTACTTTCATTTGATTATATGTAAAAATAAGTAATTATTTTACCGATTATTTATTGTCTAAGGGCTAAAAATGGCTATTTAAACTGAATAATACCCTTATTATGTTAAAAATCGGA # Right flank : TCGCTAGCCTATGTTGTTGGCTACGCTGTGTTATTTTGGGCACTCCCCTCGCAGGCACACAAATTAAACCCCATCTGGCCTTATACCGTACACGCCCACCTCCCATAGGAGTGTGGCTGTGCTAAAATATCAATAACATCAGATACCCGTTTTTGGAATAGAATTTCTGAAGGTGAGGGGAGAAGCTGTGCAGACGATTATTGTTAAATTGAATCCTATGCTGATGAAGAATCCCGATTTGGATATACGTTATGTTTTGCCGGATACGCTGGAGGCTTATACGGATAAGAGCATTATGGACCAAGGCTATGATTATTTGAATGATGCTAGCCATAGCATTGGAATTTGGCTGAGCTGCATGAATGCAGAGCGTGATTATTTGAAGGTGCTGGAGTGCTTTAAGGAGCAACTGATTTTGAATAATGATCTGCTACATTGCACTGAGCTTTATATCAGCACGGACGAAGTAGCCGAGTTAGCGGATTGTACGAAGGTCTACC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 212177-213082 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN909045.1 Paenibacillus senegalimassiliensis strain SIT18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 212177 32 100.0 33 ................................ ACCTAAAATTCCTCCTTTGTTTTTACCTCTTGA 212242 32 100.0 36 ................................ CGGGTTGACCGGGAGCTGAAGGCGCTCGGCGTTGTT 212310 32 100.0 35 ................................ AAGAAGTCGTTGATTTTATTCACAAAAAGTTTGTC 212377 32 100.0 34 ................................ ATGATATTAGGCTTGTTGTCGTCTGCCACGTTCC 212443 32 100.0 37 ................................ ACACCAATGGCGAGACGGTCAACTTGCAGGTGTTTCG 212512 32 100.0 35 ................................ TTCGTGCGGTTCGCGTCAGCCAGCTTGATCAGGGC 212579 32 100.0 36 ................................ AATTTGATCAAGATCGGCATGAGCGAACCAATTACC 212647 32 100.0 34 ................................ GGGTGGCCGAGGATACTTGGGCTCGGGAAATTGA 212713 32 100.0 35 ................................ TAATTATGGCAAATGCAATCAATTACGCAGAAATT 212780 32 100.0 36 ................................ AATTTGATCAAGATCGGCATGAGCGAACCAATTACC 212848 32 93.8 36 ............AT.................. AGGAGCATATTGGGGATACGGTGGCACATATCACCG 212916 32 93.8 37 ............AT.................. GAGACAATCGGTACAGGCATGGAGCAAAGTCAGGATG 212985 32 93.8 33 ............AT.................. CCGGCTCCGCTAATCATTACAGATGGACACATC 213050 32 71.9 0 ............AT.......AT...G.GTTA | C [213069] ========== ====== ====== ====== ================================ ===================================== ================== 14 32 96.7 35 GTCGCACCTTACGCAGGTGCGTGGATTGAAAT # Left flank : AAGCTTCGGGCCGAAGAGCGTAGCGCCTTTGGAGAAATGTTTCCTGGTGAGGACAAAATGAAGGGGGCAGATTATTTGGAATGGGAGGACAAGCATCTATTCAGACGAGCTGTTGAACATGAATTACTTTATACCCAAGGTGTGAAGGATGGTATTCAACTGATGATTGGCATAATGGAAGAAGTGAATAGTAAATAAGGAGCAAATACGCAGGGGCAAAATTCCAAGCAGCATTGCTGGAAGAACGAGTGGAAAAATGGTATTGCATTTGGGTTGCAATTTTTAAATAATACAACAATAATTAGGGTAGCTGTATTGTGAAAATCATTTTGGTGCGAACCCCAAGCGAACATGATTTTCCTGGGAGATTCGCACCAAAATAATTTACTTTCATTTCTTTATATGTAAAAATATAGAATAATTTGAGCTGTTTTTAATGGTATAAGGGCTCAAAAAGGCTAATTAAGCTGGATAATACCCTTATTATGTTAAAAATCGGA # Right flank : ATAATAGTGGTGAATATCCTTGATATAGCGGGGTTTTTAAGAGGTAGCTACCGTCCCGAAATACGTCTTGGGGACATAATGGGGACGGTTTCTATATATGTTTTTGGGCACGCTCTCCGAATCGATCAAATTCGGTAGCTGCCTGGTCTTCCATGCTCTTGGTCACGTGGCTATACGTGGTCTGGAGCATTTTTTCATTCGCGTGTCCTAATCGTTCAGCAACGGCCTTAGCCGGAATACCTCGCTCCAGCAGATAAGTAGCGGAGGTGTGCCGCAATCCGTGAAGCTTTATATACCTGAATCCGTTCTTTGCAAGAAACTCTCTCCACCAGCTATATGGTGTGTTTGGATGATAAGGGATCCCGTCGCCCTTGTGGAAGAGAAATTGTCTGTCTTCTGGAGCTTTCCACTTACCTGCAGCTTTCGCTTCCCACATCTGTTTTTTCCAAGTCCTATTCACATAGTCCTGCAGCTCCTGCATATACCATTCCGGCATCACG # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACGCAGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCTTACATAGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 262901-263666 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN909045.1 Paenibacillus senegalimassiliensis strain SIT18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 262901 32 100.0 34 ................................ CCGCCCGTTTCAAGCCAATTTTGAGCCAAACGAA 262967 32 100.0 35 ................................ TTTTACTACTATTATTATTGAAAAAGACAATCTAA 263034 32 100.0 33 ................................ TGGCGGGCTTTTTTATTGCATTAATATGCATAA 263099 32 100.0 35 ................................ CACGGTTATGGTGATATTCGTAATTTGTGGACTGT 263166 32 100.0 35 ................................ AAGCCCATCGGCTGATGTATCTGCCGAGTTGCAGT 263233 32 100.0 37 ................................ CGCTATCCGGTGTTTTGATATAGCAGGCAAGTTGCAG 263302 32 100.0 34 ................................ CACGTGGAACAGGTTTCATTTCCAACGTGGAACT 263368 32 100.0 35 ................................ ACTTACGCTCACCCTTTCCGTAGTATTCGAGAATA 263435 32 100.0 35 ................................ AGGCAAAGGAATATTGTACATATTGGCTAATGTAA 263502 32 100.0 35 ................................ TCATTAGACTTATTGAGAGCCTCATCAGCTGCATC 263569 32 96.9 34 ...................T............ AAGGACTTCCGGGCTGTTTATTCCCTTATCTTGG 263635 32 68.8 0 .......T....A.T.T..TA....GC...CG | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 97.1 35 GTCGCACCTTACGCAGGTGCGTGGATTGAAAT # Left flank : TAATGAGACAATGGGCACAAAAAGCGGCTATGGAAGGGAACTTGCAGTTTATAGGCATTGATGCGAGCATCCCCTTTTTAAATGTCCCATGAGTAAATTTTGCTGAAATGCACGGAGGTAGCCATTAAAGGGTGCACCAAGCATTGTATTTCCCAGATACAGGTATTTGATAATGTAATCAATGTGCTCGACTAAAGAGACTTGGGATAGACATAATTAGATAGACAGCAGCATTGCTGAAAGAACGAGTGGGAAAATGGTATTACACTTGGGTTGTAATTTTTAAATAATACAACAATAATTAGGGTAACTGTATTGTGAAAATCATTTTGGTGCGAACCTCAAGCGAACATGATTTTCCTGGGAGATTCGCACCAAAATAAGTTACTTTCATTTCTTTATATGTAAAAGTATGGAATAATTTGAGCTGTTTTTAATTAAAGTAAGGCTATGAATGGCTAAATAGGCAGCATAATACCCTTATTATGTTAAAAATCGGA # Right flank : GGCTTATGTACTTGCTGCCCCTATTAACTTACACTTCCAGTAATCTGTAGAATTGGAGAAAAGTATGCATCAACAAAACACTATTTTTTCTTTGGAGTACCTGCCATTGCTTATTAGATTAAACTGTCAGGAGGCTGCTAGATTGCCAGCTTTTCTTGGTTCGACCCTGCACGGGGTTGTCGGGTGGGCGTTGCAGAATGATCGGGAGGCCTATACTTACTTGTTTGAGAACCGTCGTTTGGGAGGAGCGAAGCAAGATATAGTTAATCCATACATGATTGAGCCGCCGAGACCTCGCAGTGTTTATCATTCAGGAGATGAGCTTTCCTTCAAGCTTGTGCTGTTTGGAAATGCTATAAGCTATGCTGAGAGAGTGGTGACTTCACTAGCAAAAGCCGATATCTTTAAGCTAGGGGCTGAACGGAAAAGCTTTAAATTATTGGACATTCTACATGCTGAACGATTTTCTCCCATATGGCAAAGAGGTCATGTTCATATGA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 275209-276180 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN909045.1 Paenibacillus senegalimassiliensis strain SIT18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 275209 32 100.0 35 ................................ CATCTACATTATTCGCGGCAAACAGAAATTTGAAC 275276 32 100.0 36 ................................ AAATCATGTGTTACCTGCCCTGGTCGCGTGGACCTG 275344 32 100.0 35 ................................ TGGCATGATGATCTGATCCAGCACATTAGATGCGT 275411 32 100.0 35 ................................ AGAGTGGTACATATACGAATTGCGCCCGGCACTTA 275478 32 100.0 34 ................................ TTTTGCCGCTCTCTTGACGATCCGTATGACCCCA 275544 32 100.0 34 ................................ TTGATGGGCATAGTTATTGTGTAATTTTGCCATT 275610 32 100.0 34 ................................ TGTAGGAGAATTTTTAGAGTTTGCGGTAAGGATC 275676 32 100.0 36 ................................ CCGTAAGCACTCAGGGTGGCAGCAGGGGTGTGTATA 275744 32 100.0 35 ................................ GCACCGGAATCCTGCATCATACAGTGCTTTGTTCA 275811 32 100.0 36 ................................ TGAGAGGTGCTTAACTCGCCCACAGACGTCACAACG 275879 32 100.0 36 ................................ TTGTATATAGATCAGCTCCCTTTACAGCACTAGGGC 275947 32 100.0 35 ................................ AAAAATAAATCAAAGTGAGGTTTTGCAAATAGTTA 276014 32 100.0 35 ................................ CCATCTTTGGCTTTGGCAGGCTTAATGTTTTGGAT 276081 32 100.0 36 ................................ CATGGCTCGAATGATGGTCGAACATCGAAGTGGACC 276149 32 87.5 0 ........................TC.A..G. | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 99.2 35 GTCGCACCTTACGCAGGTGCGTGGATTGAAAT # Left flank : CAGGGCAGCTCTAATACTAGTTTAGCCGGTTTCATATGGTTTAGTCTTAAAGGCGAAGTATTGCTTCTCGTGATAGTGAATATGTGGAACTGTTAAAATCACCAAAGACTAAAGATAGATAAATAAAGGGAAATTCGCATCTCAAAATTAATAATATGGTTGAAAATATAGATAAGCTCATAGATGAAATGAAAAAAATTCGTTCATATTGCATTTAGGCGGATTTAAGGGTTTGGCTTTGTCCTACGTGGACCATGTTGAAGGCACCTACTTGCCACATGTTCTGGTCCGCATTATCATTGAAGATGCGTAACAAGGATTAAAAGAAACTGGTGCGAACCTCAAGCGAACATGATTTTCCCGGGAGATTCGCACCAAAATAAGTTACTTTCATTTACTTATATGTAAAAATATTAAATTATTTTAGCCATTTTTTAATTAATTAGGGCTATAAATGGCTAATTAAGCAGTGTAATACCCTTTTTATGTTAAAAATCGGA # Right flank : TTGATAAGTTCACCACTGAGCTGACCCTTGTCTGCCACACCACCAGCCAAGCCCCTCTGTACATGCCCTGCATGTTTTCACTTGACATCTGGCCCGGGGTGCTATAAGATTTCAGTTAATATTTCAATACGTTGAAGAGGAATAGTAAGACCTTCTGAACGACCAGAGAGCTGCTGGGTGGTGCGAAGCAGCCGTGACGAGAGTCTGAACTCACCTTGGAGTGGCTTGCTGAACATACCAAGTAGGTGGAGCCGGTAACCTGACCGTTATATCGGGAGGGCATGAGAGCTGATTCATCAGACGCTCATGTCTATTGAGAGCATGCCAACTGGCATGAATGTGGAGTGGTACCGCGTAGGACGTCAAAGTCCTTCGTCTCTGTTGTTAGCAGAGATGAAGGGCTTTTTTTGCATGCTGTCGACATTTGTCAATTAGGATTGGAACCATGAAGGAGAGGAAGGATACTTATGCGAAATGCCGAAAAATACACTCGAGGTTAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 278540-278968 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN909045.1 Paenibacillus senegalimassiliensis strain SIT18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 278540 32 100.0 34 ................................ ATTTTCGCGCTGGGCGCTGGATTCTTACGCACCA 278606 32 100.0 33 ................................ TGCTGGAAGGCATCAGGATCGTCTTTGTCAGTC 278671 32 100.0 33 ................................ ATTTTATTGCTGACGCTATCCAGCGATTTAGAT 278736 32 100.0 35 ................................ ATGGGTTAACTGATCCTCCGTGTTATAGGTAACGA 278803 32 100.0 35 ................................ AAGGCTTTCGCTATCGTAACGGCTGTACCCAGCCC 278870 32 100.0 35 ................................ CGACATATCCGTGTAGCTGCCATTGATTCCAAAGC 278937 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 100.0 34 GTCGCACCTTATGCAGGTGCGTGGATTGAAAT # Left flank : AAAAAGAGGGCGTCAGGGAGATTACGGGCAGTGGAAACGGTAGACTTGACTCGATCAGTAATGCTTTGCAAACGTATCTTGGCATAACCTATACCGACCTGATATACACCGAACATGCGTTGGAAACGGGCTCCAAATCCCAAGCTGTCTCCTATATCGGAGTGACTGCGGCGGATGGGCAAATCCATTGGGGCTGCGGTATCGACGTCGATATCATGACTTCCTCGGTAAAAGCACTTTTCAGTGCCATTAACCAAATGATTGCCAAGTAGCAGTAATAAACCGGTTGGATTAAGGCGATAGTTTGATGGCTATTGCGTAAAAAAAGCAGCGGTGCGAACCCCAAGCTCACATGAAATCCCTGGGAGATTCGCACCGCGCGCCCCACAAGGGCTCCCGGGTTTTTGGTCATTTTCCGCTCGAATTTTAGAGCCTCATTTTCGAGGTTCGCACTTTAGGTCCTCTGAACCCTTGCTACGCCTGGGCTCATTTGTGCCGCT # Right flank : TCAGATATCTGATTGAGCTGGCCGGTCGCACCTCCCACAAGTGAAAAAAACTTAAAGACATACCCCCATATTAAGAATCTAGCCCCCATCTAACTCCGATGGGGGCTATTTGTCATTCACGCCCAATCCATAGCAAAACCATCAAATTTGCAATAATAATATGTTATTGTTATATTGATAATGTATTAACAAATAAACAAGAGGTGATTAACGATGGCTCAACAGGCTTTTCTTAATTTAGATAAGGAAAAACAGGATGAACTGATGAATAAGGCCATGCGTCTTTTTGTAGATCATAAGTACGAAGACATCACGATCAAGCAGCTTCTTGAAGCATTGTCGCTGTATCCGGCAACCTTTTACCGGTATTTCAAAGATAAGGATGATCTTTATCATCACTTGTTAGTGAGCTTGGCGGAGAAAAGAAAGGCGTTTTTAGAAAAAGATGGTCAAGAGTACGTATTTGAGCTTACGGGTTATGACAAAACGGCTGAGCCTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 723499-725548 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN909046.1 Paenibacillus senegalimassiliensis strain SIT18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 723499 32 100.0 33 ................................ AATGACCCACTTATGAGCCAGATCCACACGCTT 723564 32 100.0 34 ................................ CTCTCCGTTGACCTCTATCGACACAAAGGCTCGG 723630 32 100.0 34 ................................ TTCATTGCGCATCGTGTTAAGGGATTGTTCGAAT 723696 32 100.0 34 ................................ TAGTCCTTTGAACAAAGCGACTGTACCAGCAATG 723762 32 100.0 36 ................................ CTACTGCCACTCCCGGCACCATCCGTCCCGGATAAC 723830 32 100.0 34 ................................ TTGATTCGCTTGGTTTTTATCTATTGAAATAGGA 723896 32 100.0 34 ................................ GCTGAACTGCCTAGAGGGCTGCATGGCTATCATA 723962 32 100.0 35 ................................ TTCGTGTTTTTCAGGTGTTCATTGACAAACCACAT 724029 32 100.0 34 ................................ ATCGTCAAGGAAATTGTTTTGACATCTCCTTGAT 724095 32 100.0 37 ................................ CCCACTTGTACTAGCCATATTTTTTGGACTTTTTGAC 724164 32 100.0 34 ................................ TTTTCTTGAGCCAATACTTGATACATTTGTTTGT 724230 32 100.0 36 ................................ ATGCTCCAACTCCAATCCCCGTCTAATGCGGTCATA 724298 32 100.0 37 ................................ ATCGGGGTGATGTCACCGAAGTTTTGTTGTAATTCGG 724367 32 100.0 34 ................................ TGATAATTCGGAGTCAACAACCAATACCGACAGT 724433 32 100.0 36 ................................ AATTTCCTCCGGCGTTAGCATGTCCAGCACCATAAC 724501 32 100.0 35 ................................ TGAAGGGCGTCGTCCCCATCGACAGCGAAGCGGCC 724568 32 100.0 35 ................................ ACCGCATCTTTACCCAAGGCCAGCTCCAGCACTTC 724635 32 93.8 33 ............TG.................. AGGAAGGTGGCACAAATGAAATGGACATGAGTA A [724647] 724701 32 93.8 36 ............TG.................. CCCCAAATACAAAACTACATCAGCGCTCATTTCATC A [724713] 724770 32 93.8 36 ............TG.................. AAACTAAATTTGTATGGGGAACAGCTCGCCCTACCT A [724782] 724839 32 93.8 35 ............TG.................. CATCGTGTAGAACGGCTCATCTGGAGCCGAAACCT A [724851] 724907 32 93.8 36 ............TG.................. AGCAGTAGCTGCTTTCATGCGGTCGCGCTCGATCTG A [724919] 724976 32 100.0 34 ................................ ATCCCGCAATCTGCCCAGTCTAGTGGAAGCGTTC 725042 32 96.9 36 ........T....................... GGATGGTAAAGGGTACCGGCATCCCCCCGGCGACCA 725110 32 100.0 36 ................................ ATTAACAATCCGAAACCACCGCAAGAATTGCTAAGA 725178 32 100.0 37 ................................ TATCAGGGGGGACGGCGGATGAGCTTGGATGTGGTTA 725247 32 100.0 36 ................................ CATGTCGCCATCCTTGAGCTTATCGCCCATGGTGCG 725315 32 96.9 35 .....................G.......... TTTGAGAGGACTTGAGGAAAAGAGTGGGGTTAGTT 725382 32 100.0 33 ................................ TGGCAGTGGGTTGCTGATTCCTCCGGGGCCTTG 725447 32 100.0 36 ................................ CGCAAAAGCGCGGTGAATCGTTGGGCGTTCTCCAGC G [725461] 725516 32 87.5 0 ............A.........T...CA.... | A [725542] ========== ====== ====== ====== ================================ ===================================== ================== 31 32 98.4 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CCACAGCCACATCTGGACGGTGTTCATACCGTGTTCGGACAAGTGACCTCCGGGATGGAACTGGTAGACAAGGTTCGTCCTGGCGACAAAATGAAGGAAGTTACAGTTTGGGACGAAGCTTAAGGTGTTGTATGTAGCTTCAGCAAGAAATCAATCTTTCCAATGATACCGCCCGTCTGGGCGGTATTTCTTATGTCTGGATATGGCATTATCACAGCATAACGATAGTAAGAGAGCGTGTAATTTTGTGGATGACTGTGGTAGACTCTTTTTAACAGGATTTCAAGTTATTCAGAGATGCAAAACAGGTGGAAAAAGTTAGTTTATGGCTGGTGCGAATGTGAAGCGAACATGATTTCCCTGGGGGATTCGCACCAAAATAATTTACTTTCATTTGTTTTTATGTAATAATTATACAATTATTTGAGCGTTTTTGATTGTATAAGGGCTGAAATTAGCTAATTAAGCAGAAAAATACCCTTATTATGTTAAAAATCGGA # Right flank : TGAATATTATTACCCGTTAGACACCTTCTCAGGCATGCAAGATTGTCTAGTGCCTCTTGCATTTTCTGTATCGGGATGGTAACATTACCCCGAAAGCAACTAACAAAATATTTGTAATCCTTCGGGGCGGGGTGCGATTCCCCACCGACGGTGATGGCTCTTTTGAGAGCACAAGTCCGTGACCCGTATGATGCTTGAACCAAGCATGTGCGGCTGAGCCGGTGAGATTCCGGGACCGACAGTATAGTCTGGATGGGAGAAGGAAAACGCAAGAGATACATGGGGCTATACTGCCAGATGTATCAGGAACTAAGGGCTTTACTTGACAAAGTTCTACTTTTCACAAAGTGAGAGGTGGGCTAGTGGAGTAGTAGCTTGCTTCGTTGAATTTGTCGACGGGTCTCGTTAAGAGACAGGATTAGACAGGACAACAGCAACGCTCTTTGACTTGCGTAGGATCACTCTCATACCAACCCTGCCGGATTACGGCAGGGTTGTTT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //