Array 1 467090-467598 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIRT01000002.1 Cronobacter sakazakii strain CS-57 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 467090 28 100.0 32 ............................ TGGAAATGTTCGAACCCACGTTGCGCGATAAA 467150 28 100.0 32 ............................ GTGCAGGCCGTCGAAAAACCGTCTCTCGGTAT 467210 28 100.0 32 ............................ CGCGATAACTACCGGCACGTTCAGCGGGAACG 467270 28 100.0 33 ............................ AGATACCCCGTGGGGCGAGCGCCGTAATCCCCG 467331 28 100.0 32 ............................ AGCACAGCCATCGCGCCGGTGCTGTAGGTGCC 467391 28 100.0 32 ............................ TGCGAATACAGCGCGCCCGGTGCCACCACCGC 467451 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 467511 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 467570 27 92.9 0 ........................-..T | T,G [467590,467593] ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCTGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGCAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 408008-406026 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIRT01000004.1 Cronobacter sakazakii strain CS-57 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 408007 29 100.0 32 ............................. GGGTTTTGGTGTAATCATTGGCTGTCATTGTG 407946 29 100.0 32 ............................. ATGGGGCTCGGGGATTTTGTTTTCTCTATATC 407885 29 100.0 32 ............................. GTATACGCGCATTTAATCTCAGAGGATGGCAC 407824 29 96.6 32 ..................A.......... TACGCCAGCTGTGAGCAGGCATTTCGGCCTGA 407763 29 93.1 32 .A..........T................ AGATACCGGAGCCGCTGAGAAAAGCGATTCTC 407702 29 93.1 32 .A..........T................ CGCTTAAAGAATGGTACGCGCAATGTAATACC 407641 29 93.1 32 .A..........T................ CAACCACTAATAATGGAGCAATATTTCATTAC 407580 29 93.1 32 .A..........T................ CCGTTTATCTGTGCAATGAGTCGCCAGCGCTC 407519 29 93.1 32 .A..........T................ TCAGGGCGGCTTTTTCAATAGCTGACAGCCAC 407458 29 93.1 32 .A..........T................ GAATTTGGAATCAAACGTGTTATTGGGTCAAT 407397 29 93.1 33 .A..........T................ CAATGAGCACAGAACCGGCCTGGCTGGCGAAAG 407335 29 100.0 32 ............................. CGATTTGTGGCGCCCCCGCCTGAAGTGCCAGT 407274 29 100.0 32 ............................. ACGGGCATCCGATATTAACCTGGTGCTTCCAG 407213 29 100.0 32 ............................. GAATTTTGCCCCGTCATTGCCTATGCCATAAA 407152 29 100.0 32 ............................. ATGACATAGACGAATACCGCCCCATTTTTCAT 407091 29 100.0 32 ............................. CCTCACGTTACGCTACTGCTTTGACTTGCCGC 407030 29 100.0 32 ............................. GCCCGTGAAATTGAGGGGCCGGAGGAGAGTTA 406969 29 100.0 32 ............................. CAGGTAGAGATGCTCTATTCCTGCCTGCCCGC 406908 29 100.0 32 ............................. AAAGCCGGGTTGATGAATTGTTGCAATTGGGG 406847 29 100.0 32 ............................. TGAACATGGTTTACGCACAAATTGAGAGCGCC 406786 29 100.0 32 ............................. AAACGGGAACAGTTCAACGGCAAGCCGCACCA 406725 29 100.0 32 ............................. TATGGTTTGTTTTTAACCCCTTCTTCCTGACG 406664 29 100.0 32 ............................. CCGTCACCCTTAGCTCCAAAATCTTTGACGCT 406603 29 96.6 32 .................A........... AGGCGCGATTCAGCGTCCCGCTGTGGTATTCG 406542 29 100.0 32 ............................. AACATAGAGAACGCGGCACAGAAGAGTTTCCG 406481 29 100.0 32 ............................. ATTGGGCGTTAACGTCGCTAAATTATCCTGAG 406420 29 96.6 32 ............................T TCCATCGTGTCTCTGATGAATGCGCGCGCAGT 406359 29 93.1 32 ............T...............A GTAAAGCCCATTGTTCCAGCGTTGTTTTATGC 406298 29 93.1 32 .A..........T................ CGAAAGGGCAGTATACGGTTATGCTTCAAGAG 406237 29 93.1 32 .A..........T................ GTATACGTGCGGCCATGCCGGGAAGCGTGCCA 406176 29 100.0 32 ............................. GACGCATTTGGCGACGACGCAGAACCTGGGCT 406115 29 100.0 32 ............................. CTTGCCTGGCAGGGCAGATTGATATCATAAGC 406054 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : | # Right flank : TTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCTTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGTGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 190289-191354 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIRT01000008.1 Cronobacter sakazakii strain CS-57 Scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190289 29 100.0 32 ............................. GCATCAGGGCGGGTATAACCGTCCTGATAAAT 190350 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 190411 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 190472 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 190533 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 190594 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 190655 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 190716 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 190777 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 190838 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 190899 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 190960 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 191021 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 191082 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 191143 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 191204 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 191265 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 191326 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAATAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //