Array 1 412799-411571 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWRJ01000002.1 Pseudomonas aeruginosa strain PAC98D IPC171_2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 412798 28 100.0 32 ............................ AGTCCATCGGCAATCGTGGCAAGCGGCGTAGT 412738 28 100.0 32 ............................ AAGCCCTCCCCCTGGAGCAGCCGAAGCGCGGG 412678 28 100.0 32 ............................ GTGATGGTGCCCATGCGGCGCATGTGCATCAG 412618 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 412558 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 412498 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 412438 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 412378 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 412318 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 412258 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 412198 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 412138 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 412078 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 412018 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 411958 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 411898 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 411838 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 411778 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 411718 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 411658 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 411598 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21971-22898 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWRJ01000016.1 Pseudomonas aeruginosa strain PAC98D IPC171_16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21971 28 100.0 32 ............................ AGCTTCAGCAGAAGAGGCAAATACTCCTCAGC 22031 28 100.0 32 ............................ TGCGAGCAGCTTGCCGCTTGCGGCCAACGCCT 22091 28 100.0 32 ............................ GCGAGCAGTTGCTGGAAGAACAGACCGGCATG 22151 28 100.0 32 ............................ ACCACTTCGCCACGAACGGCCAGATAGCGGGC 22211 28 100.0 32 ............................ GCATCCTTGAAGCTGGTTTTCTTCTCGACCGC 22271 28 100.0 32 ............................ ACTTGGAAGCTCCCATTCGCCGGCTTCAGAAC 22331 28 100.0 32 ............................ TGATGCCCGACATGGGTCGGTTCGCGGGAACC 22391 28 100.0 32 ............................ TCGTAGGCAGCCCGGTACGCTGCCCACACACT 22451 28 100.0 32 ............................ GCTGACCTGCCCTCATTGCCAGGGCACCGTGG 22511 28 100.0 32 ............................ CAAATGGGCGTGGTCGCACCCGTTGCCCACCA 22571 28 100.0 32 ............................ TGGCCGCTCGGCGTCGTCTCGTTCGCCACCTG 22631 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 22691 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 22751 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 22811 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 22871 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 32350-31422 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWRJ01000016.1 Pseudomonas aeruginosa strain PAC98D IPC171_16.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32349 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 32289 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 32229 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 32169 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 32109 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 32049 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 31989 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 31929 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 31869 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 31809 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 31749 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 31689 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 31629 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 31569 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 31509 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 31449 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //