Array 1 18763-20009 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYR01000039.1 Campylobacter concisus strain AAUH-20HCsig-a 1107409, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =============================================== ================== 18763 33 100.0 42 ................................. GTTGTCGTCGTCACCGAGGAAGTTGAGTTTAAACTCTTATTA 18838 33 100.0 40 ................................. CTCATCCATTGCCTGATCCCAAACCCAGTCCATTGAATTA 18911 33 100.0 45 ................................. AACATCAAGTTGCTACCAAATGTGCATAACCACATTTTTTTATTA 18989 33 100.0 43 ................................. AATTCTCATTTTTTTCATTTACTCTCCTTTATAAAAAAAATTA 19065 33 100.0 43 ................................. ATTTTACTGAATTACGCATTTTTGGTCCTTTAAAAAAAAATTA 19141 33 100.0 42 ................................. ATCCCAAAAATCGTTACTGATTTTTAGAAACTGATTCAATTA 19216 33 100.0 41 ................................. TTACCAGACACGGTTACCGAGTCATTATCTTTGTATAATCT 19290 33 100.0 41 ................................. ACTGGAGGTGTCCATGCTGTATCAAATTCAAATAATAATCT 19364 33 100.0 39 ................................. AGCGGCAACAGAAGTCTTTGGTATGTTAGACCAAAATTA 19436 33 100.0 47 ................................. GTTATAGCAAAAACAGCAAAAGCTAAGGTGGCTAAAATAGCTGATTA 19516 33 100.0 44 ................................. ACAAATTTTGATGAGAACATTTCATATAGATATACATATCATCT 19593 33 100.0 46 ................................. TAATTCTAGCCATTCAACGCTTTTTGCAAGGTCTAGTCCTTGATCT 19672 33 100.0 44 ................................. GTGATACCAACATCTATCTTCGAGCTCAAAATAGAGCTCTATCT 19749 33 100.0 42 ................................. ATTTTTCTAAATTTTGCTTACGGAGCTGGTGTTATAAGATTA 19824 32 97.0 42 ........-........................ TAAAATTACTTTGTTAAACATCTTTTTTCCTTTATAGGATTA 19898 33 90.9 46 ..............A......T..T........ AGCTAGTATTATTAAACTAGCAATTATTGTTGCATGTCCTAAATCT 19977 33 87.9 0 ..................A..T....A....G. | ========== ====== ====== ====== ================================= =============================================== ================== 17 33 98.6 43 GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : TTGCATGGCTAAAAGCGAGACCTTAGGCGAAGGCAAGATATTTTGCCCAAGCGACACCTATGTCTAAGCGCCTTTTTTAGGGATTTGATTTTCGAACTTTTCTAAATTTCAAAACGCCCTTTTTACCGCATTTTTATGTTTTATTAAGTTTCAAAATCTTCGAAAATCTCAAATTTCCCTATCCCAAAAAAGACTTTCTCGAACTTTTGCATTTTTGCACTTTTAAAGTTGCCTTTTTTAGGTACTTAGCATATAGCCCAAATTTGCCAAAATTCGAAAATCACACAAATTTTCACTTTTCATTTTAGATTTTCGAACTTTTTAGCTTTTATAAATGCCCTTAAATTCGCTATCTTAAGCTATTTGTAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTTGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAAGCGTTTTTTGGGCTATTA # Right flank : CAGGTAGGTGCATCTAGCATAGTTCCCAAGTATTAATTCATAGATATATTTCATTTTAGTTATTTTTTAGCTGTTATATAAAAAAATAATCGTCATATTGACCGTATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGACATATGGGGCGCTTCCTCTTTTGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGTCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 7527-8871 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYR01000075.1 Campylobacter concisus strain AAUH-20HCsig-a 1107446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7527 30 100.0 36 .............................. AACTATCTGGATCAGCTGGATTAAACAAAGGCTTTT 7593 30 100.0 34 .............................. TTAAAGGTGTCGCAGCCGAAAAAGCCGAAAAAGC 7657 30 100.0 36 .............................. ACTACAACACCAACACAATAGACGCAGTAGGTGCAA 7723 30 100.0 36 .............................. GGATTAGGCTTGCCAGCATAGATGCGCCAGAAAAGA 7789 30 100.0 33 .............................. TGATATATAGGCTCTTTCTTTATGAGCCAAAGA 7852 30 100.0 35 .............................. CAATTATGTTTAGCGCCGCTTTGATGAAATATATC 7917 30 100.0 37 .............................. CTGGTAAAGCTTGTATTAAAAAGCGGACTTAGATTAA 7984 30 100.0 36 .............................. GGCTTTCGCTGCTTTCTTTCTTTGCTGAGATAAAGT 8050 30 100.0 37 .............................. TTTTCGCATTTATTACCCAAAACCTCAATTTCACAAA 8117 30 100.0 35 .............................. GGCGATAGTAAAAGGATAAAAATGAAATTCATAAA 8182 30 100.0 35 .............................. CAACCAGCAAAGAACAGAGTTTAAAAGCTTTAGCC 8247 30 100.0 36 .............................. ATTCTTGTCGGCGTTTTGGCGGTCGTCAAGCGTGCA 8313 30 100.0 36 .............................. CTCTGTGGGATGTTCATAAGTTCGTGGTTGACCCAG 8379 30 100.0 35 .............................. GTGTTATAGGTGTCCCAGCTTTTGACTACTTTTTC 8444 30 100.0 37 .............................. AGCTCGAGCCACCAACAGAGCTAAATAACTTTTGCGA 8511 30 100.0 36 .............................. CGTGGATGTGTAAAACACCCACAGGCACGCCATTTT 8577 30 100.0 36 .............................. ATTCCAGTCGTCAATCAAAGCCTAAAAGGTTTTAGC 8643 30 100.0 37 .............................. AAAGAAACGCAAGATTTCGATGAGCTTTCGGCGTGGT 8710 30 100.0 35 .............................. TTGCAGGATATATCTAGGCTGGAAACTTATGGATA 8775 30 100.0 37 .............................. AAAGATATAAAAGATTTAGGCACAAATTTACAAGGCT 8842 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGTTAAGCCTTCACCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCACGCCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAACAAGCTTAGAAAGTGCATCTGCGAGGACGCGCCTTATGAAGGCTTTGAGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTAGGGCTTGGCGTATTTACACATGGCTAAATTTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCATCAAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : CCCACCAAACATGGTTGGCGACAACCGCAATCACTCTTTTGATAGTCGTTTTTTCAGGGCAGTTCCATATAAATTTTTAGTTGGCAAAGTTAGATGGCAGCTATTTTGACACAATTTAGCAAAAAACCTTGGCTAAAGATTATAATAAAACAAATTATTGGGTCAATAAAATTTGAAGAAGGTTATGAAATTTTTTGTCGATTATAATTAAAACAAAAATATATGAATTTATAAAACCCACTTGTAAAGACAAGCAGGTTTTAAAATGTTTTATTTCTCTAGTTTTTCTTTAAGTTTTTCTTTTTTAGATTTAGCTTTTGAAGCAGCTTTTTCTTTCTTTTCTTTTACTTTGTCAACAACTTTGTCTTTTTCATCTTTTGCTTTTTCACTCATACTAGTTTCATCTTCTTTGCTAGAAGTTAGCTCTTCTTTGGTTTTAGAAGCTTTCTTTTTAAATTTATCTTTTTTATCAGAGATTTTTTCTTTCATCTCGTCTTTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //