Array 1 506-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTU01000001.1 Bifidobacterium asteroides DSM 20089 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 505 29 96.6 32 ............................C TCGCAAAAACCGACCCGGCTATAAAGGATATC 444 29 100.0 32 ............................. CAGCACTTGTATAAGGTTGGTGAATTCACTAG 383 29 100.0 32 ............................. GAGTTCATGCAAGAGCTGTATGCTGGTGGCGG 322 29 96.6 32 ............................C CGAAGTTTGTTGGCATGCAGGGTCCGTTTGAG 261 29 96.6 32 ............................C AACAATCGCCACAGCCACCATGCACAATATGA 200 29 100.0 32 ............................. TCAGCTAACAACAGTTCCTTATCGTTGTACTG 139 29 100.0 32 ............................. ATGCCAGCCTGGAACTCACGCCAGCAGTGTCA 78 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGTTCCCCGCATCCGCGGGGATGATCCT # Left flank : GCCACATCACCGCTAGGGTTCGGGACCGGCTCTGGGAACGCATCACAGGGCAGATCCGAACCGGCAAGGCCATTATGGTCTATTCCGCCCGCAATGAGCAGCATCTGAGTTTCAAAGTGCATCGCTCAGATTGGAACCCGGTAGACTGTGAAGGATTGACTCTTATGGAGAGGCCTACGGATGGCGGCGATGGCAGATCTGCGGGTGGTAGAAACCGATACCGCCGGACTGGTTGGAGCAATGCCAGCAAGTACAGACGTGCGGCGAGGTTCCGGCGCTCGCAATCCGGCTGAGCCCAAGCGGGTCTGCACTTTTCAGATGAGTTTTGCCGATGAGTGCCGAGTACTGATTATTAAGCCAGTGCATTGATAAGGAGTTTGGTGTATATGGTCTGAATTGTAATGGCTGAGACGGGGAATAGAGGGGGGCTCGAAATGCAAACTCATTAAAAATCAGAAATCTTGGTTATTGTATTGTTGGGATTGCAAGGATTTCTAAGT # Right flank : GAGTTCAGGCGGGAATAGCTCATTGCCGATGATGTGTTCCCCGCATCCGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATCCGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18447-17807 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTU01000036.1 Bifidobacterium asteroides DSM 20089 contig36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18446 29 96.6 32 ...................C......... CCGGCAGTCAGCGGCAGGCTCGGCCGGCGGCA 18385 29 100.0 32 ............................. TCGGTCATCGGCAGCGTACGGCTCGAAGACCT 18324 29 96.6 32 ............................G TCCAGCGAGCTCAAAGGCATCTGGGACAAGGC 18263 29 93.1 32 .............G..............G GAGGCCAGGGTGACCCGGGTCCCGGCACTGAT 18202 29 96.6 32 ............................C GGTCGAGAAGAAGCGGGTGCAGCTGTGGAAGA 18141 29 93.1 33 ..............T.............C GACCCCAAGGAGGCCCTGACGGTGGACGGTGAC 18079 29 100.0 32 ............................. GCTCGTTGGATGCATACCGATACATGGCATCT 18018 29 89.7 32 .....T........T.............C CGTGCAGAGCTAGCTACAGCCATGTCAGTGAG 17957 29 96.6 32 ..............T.............. GGTTTCCGGTTTGTCGTCTTTGCCTTTAGGTT 17896 29 93.1 31 ..........T........T......... GGATCAGGGATAGGGTTCAAGAAGGAGCCAA T [17870] 17835 29 89.7 0 ......T......T...........C... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 95.0 32 GTGTTCCCCGCATCCGCGGGGATGATCCT # Left flank : A # Right flank : AAAGGACATCTAATGGATGCCTTCAGGTTCACCATTATGAGAGGAGACGACCAGAAAATGCATAAGGCTTTAATAAGCGAAATGGCATCCAGGGATTGTGCCTGCACCCGTCATGACAGCATTCCTGAGGATCTGATTGACGGCTATCCGCCGAGACACGCATAATCGAGAAAATGGGTGAAACTAAGCTCCTGGTCTGGAATTCGCTGGATGATGTGGACAAGAGAATGATCCAATCGGATTGCGTATACTACGGTACAGGCTGCGGCGGCGAAACAGAGGTGGGTTTCTACGACGTTATCCGCATAATGCGATTCGACTGGTTCATTCACGTGCTCCCACATGCTGTTTCAATCAGCAAAAGAATCGCTATAGGAGCGTGGCGGAGAATCCATAACAACATTATGGTTTGAACATGAGTATGATTTAAACCCGAGCGTTTGATTCTCTGGGGATGATCCAGCCGTCTATTCGATTAAGAACGAGAATACCGCGTGCTC # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATCCGCGGGGATGATCCT # Alternate repeat : GTGTTCCCCGCATCTGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //