Array 1 132192-131980 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMBU01000003.1 Bifidobacterium pullorum strain LMG 21816 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 132191 24 100.0 39 ........................ TGGTGGTCCTGTTGAAAAGGTGGTGCCAAAAGGTCCGGC 132128 24 91.7 38 .................A.C.... AACCGTTACCGTTGAAAAGGTGGCGTCAGAGGGGCCGT 132066 24 100.0 39 ........................ TGGTGGTCCTGTTGAAAAGGTGGCGTCAGAAGGCCCGGC 132003 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 4 24 97.9 39 TAAGCGCGTAAGTCAACGGTTGAA # Left flank : ATTCGGGTTCCCCGCGTCTGTGGCGGCTGTCGAGGGCGCTCGCAGCGTAACCGTGTTACTCTGTGGACAGAGCTTTTCTGGCTCCCGGACGATGGTCAAGTACCCGGTGTGCGACAAGACTTGCCAGGAGTGTGTGCCATGTCATGGATTGTGCTGGTGGTGTCTGGAGTGTTCGAATCGGTGTGGGCCATCGCGTTGGACCATTCCGAAGGATTCACCAAGCCTGTTCCGGTCATTGTGTTCGTGGTTGCGCTGGTGCTGAGCATGGGCGGGCTGTCCTATGCGATGCGCGACATCGGCGTCGGCACGTCCTACGCCGTGTGGGTCGGTATCGGGGCCACGATTACGGTGTGCTACAGCATGATCACGGGGGCGGAATCGTTCTCGTGGGTCAAGATGCTGCTGATTCTCGGACTTGTCGGCTGTGTGGTCGGGCTGAAGCTGGCCGCCTGAGCCGCCAACTTTTCAACAGTTGAAGAGTTGGCGCCAGGAGGGGCCGT # Right flank : CAGGTGAGGTCGGCCATCCGTCCGCCGGCCTCAGCCGCGGCGCTCGCGGCAGGTTTGGCCCAGGCGGCGGGAAAGAGCAATCGGGTCCAACAGGGCGTCCAACTGCTCCGCCGGCAGATCCGTGCGCTTACCGGCCACCTCGCGCACCGTGCGATTCGTCGCCACGGCCTCCTTGGCGATTGCCGACGCGCGTTCGTAGCCGATTGCGTCGTTCAGCGCCGCCGAGATGGACGGCGAGCCCTCCGCGTACCGGCGTCCGGTCTCCAGGTTCACCTCGATGCCCTCCACGCAGTTCTCGCGGAAGATGCGCATCGCGTTGTCCATCAGCTCCATGCCGGTCAGAATTTCGTGCGTCATCACCGGGTCGAACGCGTTGAGCTGCAGCTGCCCTTCGGCCGCCGCCCAGTTCACGGTCACGTCCATGCCGAAGATCACGAAGCAGCACTGGTCCACGCATTCGGGGATCACCGGGTTCACCTTAGCGGGCATGATGCTGGAAC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAGCGCGTAAGTCAACGGTTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 139682-139360 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMBU01000003.1 Bifidobacterium pullorum strain LMG 21816 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 139681 24 100.0 39 ........................ AGCGTGCTTTTGGACGCAAGGTTTCCTACAGCCTCACTA 139618 24 91.7 39 ................T.....C. GATGGGGTCCTTTGCGCAAGGTTTCCTACAGTCCCACTG 139555 24 100.0 39 ........................ ACCATGCCTGTTTCCGCAACCTTTTCTACAGGGCCGCTT 139492 24 87.5 39 ...........GT.........C. GATGGGGCCGTGGGCGCAAGGTTTTCAACAGTCCCACTA 139429 24 95.8 22 .C...................... ACCGGGGTGGTTTCCGCCACCT Deletion [139384] 139383 23 75.0 0 .C..............A.-.A.GG | T [139380] ========== ====== ====== ====== ======================== ======================================= ================== 6 24 91.7 36 TTCAACTGTTGACTTACGCGCGTA # Left flank : TCTACTGGTCGGTGACCGGCACCCACCTGCGGGACGTGCTGGACACGATCGAGTATGCGGTGGTCGAGACTCCGGCGTGGGTGGAACTGACGACGCTGCTGATTCCGGGCCACAATGACGACGATGCGCAGTTGCACGCCGAATGCGTGTGGATCCGCGAGCACTGCGGCGTGGACGTGCCGCTGCACTTCTCCGCGTTCCATCCGGCGTACCGGATGATGGACGTGCCGGCGACGCCGCTGGACACGCTGATCCGGGCGCGGCGGATCGCGATGGAGGAAGGGCTGCGGTACGTGTACACCGGCAATGTGCACCATCGTGAGGGTGATGCGACGGTCTGCCCGAACCCGGACTGCCATGCCGTGCTGATCCAACGCGACTGGTACCGGATCGAGCTGGACCGGTTGTCCCGGAACCATGGCGGTGACGAAACGGTTGGCGTCTGTCCGGATTGCGGCACCCCGGTGGCCGGGGTCTGGTGACGGGTCCGCCATCCACTA # Right flank : ACGCCGGCTTAGGGGACGTAGGTTAGACTAGGGCTGGACTGGACCGTTTTGGGGAAAGGAACGGCAATGGATTGGCTGACTCAGGCGCGGTGGCGGTTCGGCCGCATCGGCGCGGGCGCATGCGTGATGCTGGCCGCGTGGGTGGTGCTGAACGTGGCGTTGAGCGTGATACTGGTGCGGATAATGGGCGAGGGGGCGGCGAATGCGCCGCTGTGGCTGATGTTCCTCATCTCGAGCGGTCCGTTGTATCTAATCGCCATGCCAGCGGGACTGATGCTGATGCGGGCGGTGCCGGAGCTGCCGACCCGCAGGTTCGGCATGACCCCGGGCAGGTTCGTGACGTTGCTGCTGATGTGTCTGCCGATCATGTACGGAGGCAATATCATCGGCACCGTGCTGTCGGCGGTCCTGTCCGGAGGCGCGGCGGAGAACAGCGTGGCCAACTTGGCCATGGCCAATGATCCGGCGATGCTCGTTTTCGGCGTGATTCTGGCGCCGAT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAACTGTTGACTTACGCGCGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 109417-106882 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMBU01000010.1 Bifidobacterium pullorum strain LMG 21816 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 109416 28 100.0 33 ............................ CAGGTCGATCCACGCCGTCGGGTTGCTCGCGAA 109355 28 100.0 33 ............................ CTGGGCGCGCACCGCCCCGCCAGCGGTGTCGGC 109294 28 100.0 33 ............................ CATCGGCTGGAGCGTGGCCAGGACCTGGGTGAG 109233 28 100.0 33 ............................ GTGGACGGAATGGGCCGGCGTGTCGCAGAACGA 109172 28 100.0 34 ............................ ACGTGAACATCGAGGTCAAGGGAGCGTAACAGTG 109110 28 100.0 33 ............................ CGTGACCGTCACGCTCCCACCCGGAGGCACCGA 109049 28 100.0 33 ............................ CCATGCCAGCCGGTGCACCGTGTCCTGACCCAA 108988 28 100.0 37 ............................ CGCGGGCAGCCTGTATATCCCGAACCCGAACGGCGAC 108923 28 100.0 33 ............................ CGTGATGTAGCAGCTGATGTCGGTGCCGGCCTG 108862 28 100.0 33 ............................ CGCAACTCACGCAACTCAGCGCGGGAAACCCGA 108801 28 100.0 33 ............................ CGATATTCAGAACACTTGGAACTCGTTCTATCA 108740 28 100.0 33 ............................ CGACACGATAACAGTCACCACCGGGCGCACGCT 108679 28 100.0 33 ............................ CGTTCGACGCGAGCATCTGGCCGACCAGTATCG 108618 28 100.0 33 ............................ CGCCCTTCGTCCGGGCCTGTCCGTGCGCGTGAC 108557 28 100.0 33 ............................ CACCTGCACCTGTACGACGACTTTTACCTGTGC 108496 28 100.0 33 ............................ CATCATAATCCTTACGCATTCCCATACTCCTTG 108435 28 100.0 33 ............................ CCATTGATCCGCAAACCCTGCGGCGTCAACCCG 108374 28 100.0 33 ............................ CCTGACGCCCGAGCAGAAGACCACGTTCATGAA 108313 28 100.0 33 ............................ TCATTTGTTACGTTTGAACCGTAGATTTTAGTA 108252 28 100.0 33 ............................ GCTGGTGTGGGTGCCGTTCCAGAACGCTAACGA 108191 28 100.0 33 ............................ CGCGCCGACGCGGTGACCGGGTCGATGCGACCG 108130 28 100.0 33 ............................ CGCGGAGGAAACCGTGCGTTCGCACCACTCCCG 108069 28 100.0 33 ............................ CTGATCCGCGACATTTCATCGGGAGATGACGGT 108008 28 100.0 33 ............................ CTGCCGAAACCACGCCTTGTTCTGGGGGGACTA 107947 28 100.0 33 ............................ CGCCATTCCTGATTGCGTGAAGTACACGCCCGG 107886 28 100.0 33 ............................ GAAGTTAGGCGTTTCGGAAGTCCACGTGACCTG 107825 28 100.0 33 ............................ TTGGGTCAATAACAGTGCCTTTGAACACGAGGT 107764 28 100.0 33 ............................ CACGTCTTGTGCGATATAGTCAAGTCGGTTCAT 107703 28 100.0 33 ............................ CAAGGCCAACCACGGGGTAAAGCAGAACGCAGT 107642 28 100.0 33 ............................ CGCTGCCGGGGCGAAGACAATAAGCCCGCTGAG 107581 28 100.0 33 ............................ CTCCCTGAGTCGTTGGTGATGTTTCGGAATAGC 107520 28 100.0 33 ............................ GGCCTCGACCTTCTCCGGGTCGCATCGGACGTC 107459 28 100.0 33 ............................ CGAGTTCACCGACTTCGCCTGCGATCATCCGGG 107398 28 100.0 33 ............................ CTTCGGTTCCATCCTCACGCACCCCAGCAGCAC 107337 28 100.0 33 ............................ CAGGTGCGCCAGCGGCTTGAGATGGACGACCAG 107276 28 100.0 33 ............................ CACGTTGCCATCGATGCTGCCGTTCCAACCGTT 107215 28 100.0 33 ............................ CTCCAACGACGGACAGGTCCGCATCTCCCATGT 107154 28 100.0 33 ............................ CATGGATGAAACGATGTTCAGATGCGACATATG 107093 28 96.4 33 .........A.................. TCGGATGTGGACAGCATCTGGCCGAGCGGCGGG 107032 28 100.0 34 ............................ GTGGCCGCGAATATTGAACGTCCCCCCAGATTCC 106970 28 100.0 33 ............................ TACTTCATCGACAACACGCGAGGCTACATTGGC 106909 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 42 28 99.9 33 GTCTGCTCCGCACACGCGGAGATGATCC # Left flank : GCCCGGATATCGTCTGCCGCACTGTGGCGTTCAGGCAGCAACGCGTGCATTACCTCCGCCATGCTTTTGCACCTGTACAGCCTTGTCTTCCCGGAAGACGATCGACCGTTCACCACCGCGCCAGCACGTTGTCCGACCAAAACCACAACCGTTGAATCCAATGGCGCACCAACCTGCGATCAGAAGAAAGTCTCCTCGACACCGTCCGAAACGGCATTTCCCTACCTCGCCTACGGACTACGTAACGCCCCGACTATCCCATTAAGCCGATTTCATCCATACGACTTCATCTGTTGCGCGTGCAGCACAAATAGATCGAGAGAGCGGAAATTGATGTAAGACACCTGCTAGTAAACGCATCCGAACTTCTCGGGCCAGGAAACTATTGTTGATATTCATTGTTTCAAGATGTGGATTTCGCGATATCCAACATCTCCTTCATTGCCGCAATCGAATATTTTGACGACTCGAGGCGGTCCGAATCGGTGTAAAATTCGACT # Right flank : CAACGTGACCGCCGGAAAGGTCGCGCACGCCCATAACGCGCTCACCCGGCTCAAACGTGTACGATGAACGTAACTGCAACGAATAATCAACCCGAACGCTAACGTCCAGAATCTCAGCGGCAGAAACCATGATTCACCTACTTTCCGCCCATTACAGTATTAGGTGAGTCCTCAAATTGATTCGGGACTTGGTCGCCGACCGCGGTATGGCTCTTTCGCCCTGTCATTTCCATGATCCGGGGGTGCTGCCGCCGCGGACGGGACGCTTGGTGACCGCTGATAGGGACATGGCCCGCCGCGCAGGTCCTGGGGCGCGGTGAGGCCTCCTCGTAATGTGGCTGCCGGGACCGGGCGTCATGATCGCACGTCGATCGCGGCGGCCCGGAGGCGAACGGACAAAGGAGACCGCCATGCAGGCCAATGACATCGGCGTCTGGCTCGGACTTGACGTCGGCAAGGAATCGCACCACGCGTGCGCCCTCGACCGGAATGGCGACAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCTCCGCACACGCGGAGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //