Array 1 1173-2281 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWQJ01000023.1 Pseudomonas aeruginosa strain PA-CL504 IPC598_23.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1173 28 100.0 32 ............................ ACCTCGCGCCCTGATCACCCAAGCGTGCGTAT 1233 28 100.0 32 ............................ GCATCATGTACGGCAGCGAGATGCCGTCCGTG 1293 28 100.0 32 ............................ TGGATGGTGATGTAGTAGGTGTCGCCGCCGAT 1353 28 100.0 32 ............................ CGACCGAGGGGAGAGTCACCAGTCCGGAAAAT 1413 28 100.0 32 ............................ AGTGGGTCAACTTCACGCCAGCACCGTCGCTC 1473 28 100.0 32 ............................ TTCGAGCCGAGCGGAAGGTCGCTGGTGTCGTA 1533 28 100.0 32 ............................ AGTTCCCGCTGAGGCTGACCGGGAAATCTGCT 1593 28 100.0 32 ............................ CACCAGATCCACGACATCAAAGCTTACTTCGG 1653 28 100.0 32 ............................ TTCACTGGCTGCGCATGCGCGGCGAGGTATCA 1713 28 100.0 32 ............................ TGACCACGTTGATGCCCGGGTAGCTGCTAAAT 1773 28 100.0 32 ............................ GTTTTGAACTCAGGATCGCTCTGCATCATCAT 1833 28 100.0 32 ............................ ACAGGGTGTTGTCGTTACTGCGCCAGGTTGGA 1893 28 100.0 32 ............................ TGCGTAACCAAGTGCATTTCATGGCCCTGATG 1953 28 100.0 32 ............................ GTGGGGGCCATGCGGGGTGAGAGCCACTCCAG 2013 28 100.0 32 ............................ TTCGTCGTCGTTATCACGCCGCCGGCCGCGCG 2073 28 100.0 32 ............................ TTGAACCCCAGGTCGTTCTTCGCCAGCGCATA 2133 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 2193 28 100.0 33 ............................ CTGTAAGGTTCGACCCATCCCCTCTGGCCCGGA 2254 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCNGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAGAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TTGCAGTTCGGGTCTTTCGTGACCTGTCCCCAGTTTTAGTACCGCTGCCTAGTTAGTAGGCCCTGGGGTTGATATTAATTTTTCCTGCTTCAGCTGCTGCTGGCGAGTTCGCCAACTTGCAGCAAATTCTGCCGGGGTGAGATTGCCAATCGCGCTGTGCGGTCGGTGTTCGTTGTAATCCCGCCGCCAGGCCGCGATGCGGATTCTCGCTTCGGCCAGCGAACAGAACCAGTGCTCATTGAGGCATTCGTCCCGGAACTTACCGTTGAACGACTCGATGAAGGCATTCTGCGTGGGCTTACCAGGCTGAATCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 440817-440069 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWQJ01000001.1 Pseudomonas aeruginosa strain PA-CL504 IPC598_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 440816 28 100.0 32 ............................ GCCAGCGACGTGGTCGAGATTGAGCACGTCAC 440756 28 100.0 32 ............................ ATGAAAACCGAACAGACTCCCGCTGACCTGCA 440696 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 440636 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 440576 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 440516 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 440456 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 440396 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 440336 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 440276 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 440216 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 440156 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 440096 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CAAGTTACGAGACCTCGAAAAAAGAGGGTTAAAAAGAGGGTTTCTGGCGGGAGAAACTTGGCCGGCCATCCAGCGCCAGCAGGAAAACGGTGACGTGGTCGGCTACCACATCGACTACGCGATCGACATCGCCGTCGACGGCGGTGCCTGGCAGGAAGCGCTGNGGCCTACATCAACGGGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 353-620 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWQJ01000017.1 Pseudomonas aeruginosa strain PA-CL504 IPC598_17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 353 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 413 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 473 28 100.0 32 ............................ TTACAGATCGGGTGCTCTTCCATGGTGAACCT 533 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 593 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 34 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGATGTCGAGGTGGGCCTCGGCGAGCAGCTTCTTCAATCGATGTCGAGGTGGGCCTCGGCGAGCAGCTTCTTCAATCGGCTGTTTTCCAGTTCAAGATCCTTCAACCGTTTGGCGTCCGCCACGGTCATACCGCCAAACTTGGCCCGCCAGGTGTAGAACGAGGCATCACTGAAGCCGTGTCGGCGACACAGTTCCTTCACCGGCACACCGGCCTCCGCCTGCTTGAGGAAGTCGAGAATCTGCTCTTCGGTAAAACGCTTTTTCACTGCCGTCTCCTGCTCGGAAAACGGACTCTACTAAGTTTGACGTGGTACTGAAATCGGGGGGCAGGTCATTCGGGCCTGGCATGTCG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACTACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10189-9501 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWQJ01000017.1 Pseudomonas aeruginosa strain PA-CL504 IPC598_17.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10188 28 100.0 32 ............................ ACAACGCCTTCGAAGACCTGGGCGGCTTCGTA 10128 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 10068 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 10008 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 9948 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 9888 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 9828 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 9768 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 9708 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 9648 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 9588 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 9528 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCGCGAAGGTCGTCCGCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //