Array 1 50757-49093 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMR01000076.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 622737-21 SEEH3721_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 50756 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 50695 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 50634 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 50573 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 50506 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 50445 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 50384 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 50323 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 50262 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 50201 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 50140 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 50079 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 50018 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 49957 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 49896 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 49835 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 49774 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 49713 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 49652 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 49549 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 49488 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 49427 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 49366 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 49305 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 49244 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 49183 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 49122 29 96.6 0 A............................ | A [49095] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67835-67014 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMR01000076.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 622737-21 SEEH3721_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67834 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 67773 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 67712 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 67651 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 67590 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 67529 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 67468 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 67407 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 67346 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 67285 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 67224 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 67163 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 67102 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 67041 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //