Array 1 139-1026 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWFF01000008.1 Lactobacillus crispatus strain Indica2 contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 139 29 100.0 32 ............................. TTTGGTCCTGCGACTGTCATTACATTAGGTGC 200 29 96.6 33 ............................G CATTCTTTACTCCTGAGAAAAGATAAGCATATT 262 29 100.0 32 ............................. TAAAGTACCTGTTGACATTGGATGCATTCTTA 323 29 100.0 32 ............................. AGCACTGCCTTTATGATCTTCAGAACCGAAGT 384 29 100.0 32 ............................. CCAATAACATCATTTTGCAAATTAACGATTTG 445 29 100.0 33 ............................. GCTTCTTGATATTTAGTCATAACCAAAACCACA 507 29 100.0 32 ............................. TTCTTCAGGAGCAATTCCAGCGGCTTTACAAG 568 29 100.0 32 ............................. TATTTTACCTGAAACTGGGAATGGAGATTCTG 629 29 100.0 32 ............................. ATGCTGACGATGAAGAAAATGATATGGCCATT 690 29 100.0 32 ............................. CATGTACAATCTACAACTAACAGAGCTAAAGG 751 29 100.0 33 ............................. TTATGAAAGGTGGTTCCAAATGGGAATTAATGA 813 29 100.0 33 ............................. TTATGAAAGGTGGTTCCAAATGGGAATTAATGA 875 29 96.6 32 ............................C TTAAATCTTTGACTCATAGAAAAAATAAAAGT 936 29 96.6 32 ............................C GGCGAGTGTGGGGTTTGGGGCTAGCCCCAAGA 997 29 89.7 0 .........................AA.A | C [1019] ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.6 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACTG # Right flank : AGCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATTAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTAAAAAAAATAGATAGTGGCGTTGATGCAGAAATGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 141231-142179 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWFF01000004.1 Lactobacillus crispatus strain Indica2 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 141231 29 100.0 32 ............................. TGAAATTTGCCCCATGATATTTGTTTGGAGCT 141292 29 100.0 32 ............................. TTTCGACCGCAACTGGTGCAGTTTTTACATTA 141353 29 96.6 32 ............................C AGCTGGCATTATTGTAGGCAAGGATAAAGCCG 141414 29 100.0 32 ............................. TTGTCATAGTCGATTGAGTACCATTTGGTTCT 141475 29 100.0 32 ............................. TTGTCATAGTCGATTGAGTACCATTTGGTTCT 141536 29 100.0 32 ............................. ATCAGCTTGATTAATCTGCATCCCGATGCAGT 141597 29 100.0 32 ............................. TAACAAATACTCTGCTAGCACTTTGAGGCTTA 141658 29 100.0 32 ............................. ACGCCGGCTTAACTCAGCGTCAAGCAGCCAAA 141719 29 100.0 33 ............................. GAATTGAATCAGCATCATATTTAAACGGTTGAA 141781 29 96.6 33 .............G............... TTTCTAAGCGTTGGGAAGTTGGTGGTCATGATG 141843 29 100.0 33 ............................. GCACGGGATTCCTGAACGACTTGTTAAAAATGC 141905 29 100.0 32 ............................. TGGGTCATTTACCCTTGAAGATTTAATGAATA 141966 29 96.6 31 .............G............... ATGCAGGATATACCTAATAATTTAAAGACTG 142026 29 100.0 32 ............................. GCTATCAATTGGAGTAGGTGAGACTGTTACAG 142087 29 96.6 32 ............C................ TTACGTGACTGACTAAAAAACTGAATCCAGGC 142148 29 86.2 0 ...........AC..........A..G.. | C,A,A [142170,142172,142176] ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.3 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAGGCAGAAATGCTTCTTTTTTTTATTTGGAGTGGCTTTTTTGTAATTATGGCTTTATATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTAGT # Right flank : TGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCGTTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAAGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 144905-146093 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWFF01000004.1 Lactobacillus crispatus strain Indica2 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 144905 29 100.0 32 ............................. GTTAAAAATGTTAAGCATTTACCAGAAGTTTT 144966 29 100.0 32 ............................. AAGCTAATCAGCGTAGCGATGGAAGATTATGA 145027 29 100.0 32 ............................. GATTTTTCACTGGTGGGCCGAATCGCTTCAGA 145088 29 96.6 32 ............................C TTAGTTGATGAATTTCTAGCTAAATTAATAGA 145149 29 100.0 32 ............................. AGCAAAAGCAGATGACGAAACAATCGCATTGG 145210 29 100.0 32 ............................. GATTCCCTTGTCGTACGCTTCATTCAAAACTT 145271 29 100.0 32 ............................. GCAAACATTATTTGGCTACTATCACAATGTGG 145332 29 96.6 32 ............................C AAGGTTTTATCTGTTATTAACTCCGGTATTGG 145393 29 96.6 32 ............................C AAATCGCTTGAAAGCATTAACTGCTCGACTGT 145454 29 96.6 32 ............................C AAGAAAGATCCAGATAGACCATACCGTAATTA 145515 29 96.6 32 ............................C TTAGTTGATGAATTTCTAGCTAAATTAATAGA 145576 29 100.0 32 ............................. CCTAACTTAATCTACCCTGGCAATAAAATACG 145637 29 100.0 32 ............................. GAGTTGCAAAAATGTGAAGACTTTTATAGCAA 145698 29 100.0 32 ............................. AGCCATTCGTTCTCGCTGGTTAAGCGGCCATT 145759 29 96.6 32 ............................C CGGTTTAAGGTTTGCCGAACTTTTAGCAATAA 145820 29 96.6 32 ............................C CAATCGGGCTAAAATCTTAGCCTGATTGTGAT 145881 29 100.0 32 ............................. AACAGCGCAACGCCGCCAGTTTAATGTGGCGA 145942 29 100.0 32 ............................. TACCACTTAAATCATCACCCATTTCAATTACA 146003 29 93.1 32 ...........AC................ CCAATCATTTTACTTGGTGATGATAAAAACGG 146064 29 82.8 0 ...........AC....T......T.A.. | A [146085] ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGATAAAGTTACAATTAAATTTCGATTGATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGATGAAATTCTTAATCGTGAGCGAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGAAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCAAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTATAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGACAACGCGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //