Array 1 288865-288651 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMW01000004.1 Cronobacter malonaticus strain cro2841W contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 288864 33 97.0 28 ..............................G.. TGCCGCCTTAACGTGCGGGCAGGGCATT 288803 33 100.0 27 ................................. TGTCAGATAAACGCGCAGGCAGGCCAG 288743 33 100.0 27 ................................. CGCCAGATTAGCGCGCGGGCAGGCCAT 288683 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================ ================== 4 33 99.2 28 TTTGTAGGGCGGGTAAGCGACGCGCACCCGCCA # Left flank : TTGTCGATCCGCCGTTTCGTAAAGGACTGCTGGAAGAGACGCTGAATCTGCTGGAGACGCGCGGCTGGCTGGCGCCGCAGGCGCTGATTTACGTTGAAAGCGAAGTGGAAAACGGCCTGCCGCCGGTGCCTGCAAGCTGGCAACTACACCGCGAGAAAGTGGCGGGCCAGGTGGCGTACCGGCTTTATCTGCGCGAATCACAAGGAGAGCAAAATGCTGATTAATCTGGGACGCCTGCTGATGCTGGGCGTGTGGGGCTTTCTGCTGCTGAATCTGATTCAGCCCTTCCCGCGCCCGCTGAATATTTTCGTTAACGTGGCGCTATTTTTCATGATAATCATGCATATTCTGCAATTATCGCTGCTGCGCGCCACGCAGCCGAAAGACGCCCCGCCGTTAAGCCGTTTCCAGCAGGTGCGTATTTTTATCTTCGGCGTATTTGAACTGATCGCCTGGCAGAAAAACCAGAAGAAGCCGCGTTAACGCGCGGGCAGGCCATT # Right flank : TGCCAGGTTAACGCGCGGGCGCAGGAACAAACTCCAGAAAACGCGTTCCCTGATACACCAGCTGGCCCTCATCGCCCACCGTCAACTGGTGGTAATGGGTCTCATCCAGCCGAAACCGCATCTCCGCCCCGCCTTCCTGCGGGCGAAACGTCGCCTCATACCGCACGGTTTGCGCAGGCGGCGCGACCTGTTGCTCCCGCGAACGCCGCCCGTTTACGGGTTTTTCCCGCTTGCTGGCCACCACCACGTTCTGCTGCGTGACCGGGGCCGCGTCATTTTCTGTTTTCTCGCGCCGCTGCTGCACATAGCGAAATGAAGCAGCCGCGACGATTAACGCGATGATAATAATGAAAAAAAGCGGTGGCTTACTCATGACAGATCCCGGCGGCTTAACTCTTTTTAAGAATACCCCGCAGCGCCAGGCGTTGTCATCCCGCCCGTCTGACCACTAGACTGAAATCAAGGGCCGTGCGCTGCCTGTGCACGTTACAATAACTGAA # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.10, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGTAGGGCGGGTAAGCGACGCGCACCCGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 200669-201431 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMW01000001.1 Cronobacter malonaticus strain cro2841W contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 200669 29 100.0 32 ............................. GATTTAGCGCGGCTTGCGGCGCGGGTCCTTTC 200730 29 96.6 32 ............................A AATTCGGGGTTGACCTGTGAGCCAGACAATCA 200791 29 100.0 32 ............................. GCTATTCTCTACTCTTACGAGCACGTTGGCGT 200852 29 100.0 32 ............................. CACATTTTCAAGACTTATGCACAAACTAAAAA 200913 29 100.0 32 ............................. ACCGCAGAGTCAATAAAGGCGGGGAATTATCC 200974 29 100.0 32 ............................. GACAGGGAGACCGAGAAAAAATTACGCAAACT 201035 29 100.0 32 ............................. CTTTAATTCGCTTGAGCGCACACTCATGCCGC 201096 29 100.0 32 ............................. AATGCATGCCACTCTTCAACTCCTACGGCCAG 201157 29 100.0 32 ............................. GCTTTTTCTTTGAGTGGGTCGCCCTTCGCCTT 201218 29 100.0 32 ............................. GCTGGATTCTGAGTAGCGTACAGACTCGTAAT 201279 29 100.0 32 ............................. TTCGGTACGCCAGTGCCGATAATTCGGTCATT 201340 29 100.0 33 ............................. TCGTCTGTATCCGTTTATCCGTGGCCACCTCAC 201402 29 82.8 0 ................A.AT......AA. | T [201418] ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCCCGGGATTTCGCGCCTGGCACTCGCCGCCCCATTTCCCGCCACATTCTTCATCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228208-228908 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMW01000001.1 Cronobacter malonaticus strain cro2841W contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 228208 29 100.0 32 ............................. GGCGCGATATACGTTCGCGTCAGCCATTTTAA 228269 29 100.0 32 ............................. TCACCGCGCGCCAGCGCTTCATCGTAGAGATA 228330 29 100.0 32 ............................. AGTCCGGTTTCTGGGTTGTTAAGAAGCTCACT 228391 29 100.0 32 ............................. GTGGGGGGTGAGTAATGTCATCGGTGGTAGAA 228452 29 100.0 32 ............................. TTTGGCCTTGAATGGAGACCAACAGAGAAGTT 228513 29 100.0 32 ............................. TAAAAACGAGTCAATTCCTGTGCATTCTGAGG 228574 29 100.0 32 ............................. AATTGATGTCGCGCAACAGCTTCGGCTCTGTG 228635 29 100.0 33 ............................. TTGGGGATTGCTCCACGTAAACCTGTAATGCTC 228697 29 100.0 32 ............................. GTCTGGCTCGCCATTCAGGACGTAAGAGCGGA 228758 29 100.0 32 ............................. ATTCCGGGCGATAACGGCAGGGTGATTAGCAA 228819 29 100.0 32 ............................. TAATCAACGTATTGACGCTGAACATCTTCCAC 228880 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.9 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCTGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGTGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATCCCGGTGGATTTGGATGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCTGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : ATGGTTGAGTAGAATTGCCAGGCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCCGGCGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGAGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTTCCGTTCTTCCCACAGCTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //