Array 1 468356-469908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLL010000007.1 Listeria marthii strain 2012L-5526 NODE_3_length_475307_cov_46.1291_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 468356 36 100.0 31 .................................... AATAGCGCCATCACACGCAACCCCTCCATTG 468423 36 100.0 30 .................................... AAAATATTACTGGCACGTGTCAAGACTTGG 468489 36 100.0 30 .................................... ATAAACATTGCCGTTCATACCTTTTCCGGA 468555 36 100.0 29 .................................... TTTCTTGCAATGCTCCTAGCTGTTCGTCA 468620 36 100.0 30 .................................... CTACCAAATGAGCGAGAATATCCGTTTTAA 468686 36 97.2 30 ..................................C. ATTAAGCAAATCCTAGAAATCAAGTAAAGG 468752 36 100.0 30 .................................... CACGGCACACACACACATCACTTCACTGTA 468818 36 100.0 30 .................................... TATTAGGTTATACATTAAGCAGTTTTTTCT 468884 36 100.0 30 .................................... ACGGATAGTAATGCTAATGGCACATTCTAC 468950 36 100.0 30 .................................... TACACACGGAAATTACTGGGAAATTGATTA 469016 36 100.0 30 .................................... TCGAAACAACACCAGTAGAGCCAGAAGCAG 469082 36 100.0 30 .................................... TTAGCAATAATAATTTAAAATCAGGGGACG 469148 36 100.0 30 .................................... TAGAATATATAATGTTACACCCGAGAGCGG 469214 36 100.0 30 .................................... AATAGGGATTTTATTTTTTATGACCAAGTC 469280 36 100.0 30 .................................... TAAAGAATTGCCTCACCGAGTGAGCCTTCA 469346 36 100.0 30 .................................... TGATTCTTGAAAATAAACAAGAAGCGAAAA 469412 36 100.0 30 .................................... AATTCTATCGCCGCGCTACGAGCTAGAGAC 469478 36 100.0 30 .................................... TTCTATCGATTTCCCAGAACAATCTATTGT 469544 36 100.0 30 .................................... AGAAGTGAAAAAGGATGTCACACTTAGTGG 469610 36 100.0 30 .................................... TATTTCATAGATAATCCAACTAACATTTTA 469676 36 100.0 30 .................................... AATACGCGATTAAATTCGGGGAAAATTAAA 469742 36 100.0 30 .................................... TCAAGCTGCATTTAATCAAAGTATTCAAAC 469808 36 94.4 29 .........................A........C. ATCTGATGAAGATAACTATGCTGAAAAAA 469873 36 80.6 0 ......A......A......A..G........T.TA | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 98.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGACAAGTTGACTGCAACAATTAGCGAGTTAATAGGCTATGAGCTATTGGAACATGAACTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCGTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTGTATCAAGTAAAAGTTCTGTTTATTGAACCTAGAAAAATAGACGGCTTTCCGCAGGCTATTTTGGATCCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGGCTGGACGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTCGGAGGATAGAAAAAAATCTACGAG # Right flank : AAGAAATAAAATCTTTCACATCAAAAGTTCTTGGTAGCCTTTAACAAGGATTATAAAAGTTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTTGCTTCCCCTTTCTTCTATATAAACGATCTAGATTTCTTAAACTTAAATTTCGAAGCAAACATCGACCGTGATACAAATGGTTTATTCTCCTATTCAATACACTTCAACCGAGCTTGCAAATTTCAAATTGCCATAAGTGAAGGGGAATTACCGTTAAAAGACGAAGTGCAAAATAACAATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAAAGCGAGTAAAGAAAGTGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACGAATAAAACAGAATTATCCATAGAGAATTTAACTCTTGAAAGCTTGATTTTGAGCGACAGAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1115442-1114061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLL010000004.1 Listeria marthii strain 2012L-5526 NODE_1_length_1385554_cov_33.586_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1115441 29 100.0 36 ............................. GTAAGAACTGTTAATGATTTAGTCGCTGTGTCAATC 1115376 29 100.0 34 ............................. GATTTTAAATTTAATTATAACGCGCGACAGTATA 1115313 29 100.0 36 ............................. GAATGACCGGGCCTATACTTTAAAGTTTGTAGAACG 1115248 29 100.0 34 ............................. AGTGCCATATTTGGTAGCAAAAATCACAGCAAGC 1115185 29 100.0 35 ............................. ACGGTCAAATGATGATGGCCAACTTCTTCAGCTAG 1115121 29 100.0 36 ............................. TATCACGCGCATAAGCATCATAATTGAAATATCTCT 1115056 29 100.0 34 ............................. TTATTTATATTTTTTGGATCGTTGGTGTACTTTA 1114993 29 100.0 34 ............................. TTCACTTCTACTAGGAATGGAAATAAAGTAACAG 1114930 29 100.0 36 ............................. TGGTGCAGGGGTTAGGCAACTTCGCAGTAAAAGCTA 1114865 29 100.0 32 ............................. GATGATTTAGCTATTAAAAGCGATTTCGAAAT 1114804 29 100.0 37 ............................. GCGCCTAGCACTTATAAATTTGCTGGCGGCCAAAAAG 1114738 29 100.0 38 ............................. TTAGGAGCGGCGCCGCCTTTATTGTTCTTAGCATTCCC 1114671 29 100.0 37 ............................. AAAATAGAAAATGAATCAACTGCCGATATTTTTGCAC 1114605 29 100.0 34 ............................. AGTTTTGATGTCGAATGGCTGCCAGTCCCATATA 1114542 29 100.0 36 ............................. GTTTTAAATCTCATGCTTGTTCCTCCCACTCGTACC 1114477 29 100.0 35 ............................. AACTTTGTCGCCGTATTTTTTATATGCAGCGCGTT 1114413 29 100.0 36 ............................. ATGTCTGCGATGGCGTCTTGCAGTGCACGCATGGCA 1114348 29 100.0 34 ............................. ACCATTGAAAAACTGCAAAAGGTCGCAGACTTCT 1114285 29 100.0 37 ............................. ATTCTTCGTTTTCATCTATTCCGGAATATTCAATTGC 1114219 29 100.0 36 ............................. AGGAAAAAAAGAATATAATTGCGCTCGCTTTTAACA 1114154 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 1114090 29 86.2 0 ...............C......CC....C | A [1114065] ========== ====== ====== ====== ============================= ====================================== ================== 22 29 99.4 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTAAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAATGAGTTTGAAGCTTTTTAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACTTGGACCCCAATCCAAGTCTTTTCCCATATCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCGGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCTCAAACCCTGCTCCCGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGCACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1131290-1130363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLL010000004.1 Listeria marthii strain 2012L-5526 NODE_1_length_1385554_cov_33.586_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1131289 29 100.0 35 ............................. TTTTTCTGTTGATTTCCATTTTCGTATCTGATTAG 1131225 29 96.6 35 .......................A..... GAAACTTACGACGTCGTTAACAGTTATGGACAAAC 1131161 29 100.0 36 ............................. ATAGAAAAAATTTTTTTGAAAAGAAAAGTCACGAAA 1131096 29 100.0 34 ............................. CCCCCTGTATCTCCTGTAATCAACTCGTGTATAG 1131033 29 100.0 34 ............................. TAGAAATAAAAAGTTGAACCCGTTTTTTTGTGGG 1130970 29 100.0 35 ............................. AAATGACCCCCACTTGTGTTTTGAATTGAACTTTA 1130906 29 100.0 37 ............................. TCGTCAAAAACAAAAAAAGGTTCAATTTTTCTATCTG 1130840 29 100.0 35 ............................. AACGTTAATGAAGACTGATATTGAAAAAGCAATGA 1130776 29 100.0 34 ............................. TCGCAAGGTCCTTTCAATGTACTGTAACTTATCT 1130713 29 96.6 36 .........G................... ATCATTAGCGCACTTACCGGTTTGAAAGATGCGTTT 1130648 29 96.6 34 ..A.......................... AAAAACATATTTAAATATCCCTACGCTTTTAAAC 1130585 29 96.6 35 ...C......................... ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCAT 1130521 29 100.0 35 ............................. GAGGTTGGTTTTGATTGCTCGGGACTAGTTCAATG 1130457 29 96.6 37 ..............A.............. GATGACAATAGAGGGATTTTGATTGAAAGGTCTGGGC 1130391 29 89.7 0 .......T........A......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 15 29 98.2 35 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACTACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGCCTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGACCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGCAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTATCTGTCGACCTTTGGTAGTGTGAAAAAGGCTGGGGATCGACAGAAAGGTGAGAATGATTGGAGTGAGGGGAGTTTGGTGCTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCATTGATTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : GAGATTCCAAATTTTCCATTCCCTACACAAAAAAGCCAACCAACATGATTTAGGCTTATTTTTTATCCTCCCCGTTAACAATTCCGCAACAAAGACACCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACACCCAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATTTCAGAACC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //