Array 1 59096-61897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHE010000017.1 Clostridium perfringens strain 1P6 NODE_17_length_66837_cov_44.1948, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 59096 36 86.1 29 A...C.TA..A......................... CAGCTGAAGAAAAAGAAGCCATAAGGCTT A,A [59098,59108] 59163 36 100.0 30 .................................... TAGTTGAAGTTCTTATACCATCTACAACAT 59229 36 100.0 30 .................................... TAGTGAATACGAGGTATCATACCCAAGCTA 59295 36 100.0 30 .................................... TCTAAGTTGTTGAACCCGTTAAGTTCTCTG 59361 36 100.0 30 .................................... GAAAAAATGAAAGAGGGCTTATATAAAATA 59427 36 100.0 30 .................................... CAACATAGTTGGTAAATCTAACTCAGTTAT 59493 36 100.0 30 .................................... TCAATGGGCTAAGGATGAATACGAAGAATA 59559 36 100.0 30 .................................... TCTCTATTCTTTTTTAAGTAAAGATTGCTT 59625 36 100.0 30 .................................... ACATCAAGTGGTGTATCCTCAAATCCACCT 59691 36 100.0 29 .................................... ATATATACCAAGCATTGATGCATGTTGGT 59756 36 100.0 30 .................................... TATGAATTATCACTTGGAAACAATCCTATT 59822 36 100.0 30 .................................... TTACTCTTAGTCGCTGATCGTTCATTCACC 59888 36 100.0 31 .................................... AGTTTACACATAATACTTACAACTAATCCAG 59955 36 100.0 30 .................................... GACCTTTCTAAAGGTTTTATAACAGTTAAC 60021 36 100.0 30 .................................... TGATGACGATGTATATGCTTATCCAGATAC 60087 36 100.0 30 .................................... TGGTATGAGTAGAAGTGATTTACTATTACA 60153 36 100.0 30 .................................... TAATTTTGATATTGATTCATTATCAGAAAA 60219 36 100.0 30 .................................... CTATTGCTAAAGCTATTGCAGAAGGTTTAT 60285 36 100.0 29 .................................... GGAAAAATAAAAGCCCCCTAGTAAAATAA 60350 36 100.0 30 .................................... TTAGGAGGTTTTTTATATGGAAAACAATTT 60416 36 100.0 30 .................................... TTACCATTTCCGTTATGAACTGAACTCCTT 60482 36 100.0 30 .................................... TCAGCGAACAACTTCAAGGGAATATAATTA 60548 36 100.0 30 .................................... CACCAAAGGTATATTGAGAGAAAGATAAGG 60614 36 100.0 30 .................................... CTTGGGGGTGGATTAAAAGCTCAAGATGCT 60680 36 100.0 30 .................................... GATTTATTAATTCTAGGCACACAATAGAAA 60746 36 100.0 30 .................................... TGCTGCACTAAATATTACCCCTCCAAGTCC 60812 36 100.0 29 .................................... AAAATGAAAGTATAAATTTAAATATTTAT 60877 36 100.0 30 .................................... TATGAATTATCACTTGGAAACAATCCTATT 60943 36 100.0 30 .................................... ATTTATTCTGATTAAACCCATCAAGGAATT 61009 36 100.0 29 .................................... GAAATGGGTTCTTTGTGTACTAAAATAAG 61074 36 100.0 30 .................................... CAACTTTAGACAAGGGCAAGTCATAAGCTT 61140 36 100.0 30 .................................... TCATGCAAAGATGAAAAGACAATAATTAGT 61206 36 100.0 30 .................................... TATCTATTAATGTTTGATAATTTAAAACTT 61272 36 100.0 29 .................................... TGCTTATAAGACAAGAAAGAAGAAAAGTA 61337 36 100.0 29 .................................... TGATGGTAAGTGGCAAAATATAAAAGATG 61402 36 100.0 30 .................................... TATGGAATGAATCCTAATTTCAATCCTAAC 61468 36 100.0 29 .................................... CTTCTAAAGCTCCTAAATTACTGTTAGCC 61533 36 100.0 30 .................................... CTTATCAAATGATTATCATATGAGAATACA 61599 36 100.0 30 .................................... CTCCAGTTTATTATTAATACCTCACCCCTT 61665 36 100.0 29 .................................... TAAGGGCGTGTGGCTGTTGTCTAAAATCC 61730 36 100.0 30 .................................... GGTTGAATTAACTCAACATCTGAATTTAAA 61796 36 100.0 30 .................................... CATATTCAACTTGTACCCTTATACAAGATG 61862 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.7 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGGTTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTCTCATCATACCAAAAAACAATATGACGTACTTTTCCATCACTTAATGGCTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAGTACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTCTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGTTTTATCTCTGGCAATTTTAATAATCTAAAATCTTTTTTACTACAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAACAGAATGATTTTTTCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //