Array 1 4263-3063 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGM01000097.1 Nocardia veterana NBRC 100344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================================== ================== 4262 28 100.0 34 ............................ CTACGAGGGCGACAAAGAGTTCTCGGCGATGCTG 4200 28 100.0 33 ............................ CGCGAGCGAATAAAACTAGGCAGCCAACGCCGG 4139 28 100.0 33 ............................ CGCGCCCCGCTACCCGTGGGGCCGCCGCACCAT 4078 28 100.0 33 ............................ CGGCGGCCAGTGGGGGCTCGACGCCGACGGTTC 4017 28 100.0 33 ............................ CAGTGCGAGGCAATCTGGAATGCCACCGTCCAG 3956 28 100.0 34 ............................ ACACCGCCGATATCGACCTGGTGCTGTCCAGCCA 3894 28 100.0 33 ............................ CTTCGCGCCACCGCGCACGCGGCACAGAACGGC 3833 28 100.0 33 ............................ CCAAAATTGAACTCCGGACGCGCCGGCTGTCGG 3772 28 100.0 33 ............................ CAACCGCAACGAGTCCGACGTGACCAAACTCGA 3711 28 100.0 33 ............................ CCGCTGGCCGCCGGCCCGCACCTCGAACAGGTG 3650 28 96.4 33 ..A......................... CGAGCAACGGGCGAAGGTCTGGGAGGACGTGCT 3589 28 100.0 33 ............................ CGCCAGATCGGCGATATGTGGGGTTGGGGTCGA 3528 28 100.0 33 ............................ CAACGCCGCCGGCACCACCCTGTTCACGGTGCA 3467 28 96.4 33 ............T............... CTCAGCTTCTGTCAACGCAACGGGGCGAACTCG 3406 28 100.0 33 ............................ CGTGCGCCGCGGCGCACGCATCCGGCGTGAATG 3345 28 100.0 34 ............................ CATCACCACCGGATGGATGTTCCGGGACGAACCA 3283 27 96.4 33 ......................-..... CGCCTGGATCGACGGCCGGTCGGTGACCAAGCT 3223 26 82.1 107 ........T..A....--......G... CCAGGTCCTCGCCGACTCATACGCGCCGGCTGGCCTGCTGCCTGCCACGCGGACACCACACGCAGTGGCGTGCTCCGCGCGGAAGCTAGACCAGACCAACCTGGAGT 3090 27 78.6 0 ........-.....A...T..T..G.A. | T [3071] ========== ====== ====== ====== ============================ =========================================================================================================== ================== 19 28 97.4 37 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CCTCGTCGGTGATACATGGCGCGATGCCGACCACGATGCGATAGACAGGCCACACCTGCTCACCACGGGGATAGCGCGCTACACGTCGAGCGGCATCATCGGGCGTCCCTCGCTGGCAACCGCTACAAAAGGCAAGGCGGCACTGGATAGTTTGGTGACCTCGTTCGCTGATCATCTCAAGATCCTCAACGAGTAACGCATCAGCGGTTGGAATCAGCTGCGGCGCTTTGCTATACGCCATCAACAGCCTGACCATAGGCAGTCGAGACCAGAAACTAATCTGCGGGCGCGGCGTCCCGCGGTGCCGGAGCTGCTCGGCACGGCCCTTCCGGCGAGTGAAAGTGAGGCCGCGCGGGTTCGTCGGCTAGGAGACTCGACCTCGAGGGTTGGCACGAAAGGCCCACTAGTGTCGAAGATGCTCGTCGTCACGCCGGGGTGAAAGGAACTCGAAAGTGAATGAAATTCGACCATTGCGTACATAACATCGCTGGTCATGAAGT # Right flank : TGCTACACCCGGCGGCAGATCGTTGGCACGGCCTATTCAGCCTATTCAGTTGAGAATGGCAAAGTCTGGCGGATAACAAAGACTTCGAGGCATTAAACCTGTTGGGCTACATACTGTTACAGACGAAGCACGCGGTTTTCGGCCGTCTAGGTTTAAATCGACGGTGCCCTGTCGGCGGTCGGTTGTACGCTGCGGTTCGTCCGCAGTGCTGGACTGCGGGGACCGGTGAGGGGGGGTTCGGTGCTCTCGGATGCGGCCTTGTCTGCCTGGGCGAAGAGCGACCGGGAGGGCGGCAGTCTTTCGCTGTTTCGGCATCTTTCGGATTCGGTGGCTGTGGCTGACCTGGTCTGGGATCGGTGGTTGCCGGGGCACACGAAGGAAGCGATGTCGGCCGGATTGCCGGCGGGCGTCGAGGATGGCCGGCTGTTGTTTCGATGGTTGGCCGGTGTGCACGACATCGGGAAGTTGACTCCGGCTTTTGCGTGCCAGGTCTGGCCTTT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44566-43866 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGM01000118.1 Nocardia veterana NBRC 100344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44565 29 96.6 33 ............................G AACCCGGTTGCGCGGTACGGGCCGCCATCGAGA 44503 29 100.0 32 ............................. CCAGCCGACGAGTCCGGCTGGTTCGTCCACAT 44442 29 100.0 32 ............................. GCCTTGTTGTACGGATTCGACCCAGACAGCAC 44381 29 100.0 32 ............................. CGCGTCCGCAAACTGAACAACCCTGAGCGCCT 44320 29 96.6 32 .......................T..... CGGCCGGACCCGGGTGAGAGCTTGCGGCTGGC 44259 29 100.0 32 ............................. GTCCAGCACAACATGTTCCCGGATCCGGCGTT 44198 29 100.0 32 ............................. TCGCCGGAACCGATCGGGCATCGTCCGTCACC 44137 29 96.6 32 .......................T..... CTGCTGGCCCGCACCTACGGGAGACCGCAGAT 44076 29 96.6 32 ........................G.... TTCCCGGACACGATCATCCGGACCAGGGTCAG 44015 29 93.1 31 T.............T.............. TGCTGCTGTGCAGCGCTCACGCGCTGGCGTG 43955 29 86.2 32 ............T.T......G...T... GAGCTGGTTGGTGCCGGCGGGGGCGGCCGCAT 43894 29 82.8 0 .C.......A..TC...........T... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 95.7 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCGACGAGTGGGACACCGACATCGTCGAATTGTGGGACCGCAAAGGTAATGTCGCTGCCGGTATCTCGTACGACGACGAGGAAGTTCCGTGGTAGTCCTCGTCCTCAGTGCCTGCCCGGCAGGCCTGCGTGGTCACCTCACCAGATGGTTGCTCGAGATCAGTCCCGGTGTATTCGTTGGAATCCTCACTACCCGCGTCCGCGACCTGGCCTGGCAACGTGTCGTCGAACTGTCGAAAGACGGGCGCGCCATCATGATCTACTCCACCCGCTCGGAACAAAGACTGGCGTTCAAGGTGCACCGCCACGAGTGGGAACCCGTAGAAACCGACGGTGTCCACCTCATCCGCCGACCGCACCCAGGAAACCAGAAGACCGTGGGCCCTCGAGCGGGTTGGAGCAAGGCCAGCCGATACAGGAAGGCTGGCCGCAACCGACAGACCCGACGGGAAACTGAATGAAAAACCGCCAGGTTCAATGCAAACCTGCATGTCAACAAGT # Right flank : TCCTTTTCGCCCGTGTTCATGCGGGATGTGATACTCACCCACACTCCGCGTTACGAACGTCGCTACCCGCCACAACCAGAACTCGGGGCCGTCGGTTTCGGCGGATGCGGTGGCGTCCAGGGCGGTTTGCTGCAGGGCGGGCCAGCTTTGGATTCCGTGTTCGCGGTTGGCCCGCTGTGTCTCCTCAGCGGTGGATTGTTCAGGTGTGAGATCGGCGCGGCGTGAGTTCAGCCTCGAGCTCGGTGAGTTCGTCTTCCAGCCAGGCGGTATCCGTCGAGTCTCCTGCGTTGGTGATGCTGGGTGCGGGGCCGTAGATGGTGGAGTGGTCGTCGGCGAGGTGAATGCGGAGTTCGAGGGTGCTGATCGCTTGGACGAGTTCGGTATGGGTGAGCCATGTGAGGCGGATCGGGCGGATCGAACCCACTGTCGCCGTTGGGATGCTGCGGTGAATGGCCTTCGCCCACTGGGTTTTCGGCTGTCATCAGTGCGTCCGCGAAGGT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //