Array 1 194836-196755 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAN01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3036 NODE_2_length_271828_cov_94.500550, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 194836 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 194897 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 194958 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 195019 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 195080 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 195141 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 195202 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 195263 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 195324 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 195385 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 195446 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 195507 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 195568 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 195629 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 195690 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 195751 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 195812 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 195873 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 195934 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 195995 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 196056 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 196117 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 196178 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 196239 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 196300 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 196362 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 196423 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 196484 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 196545 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 196606 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 196667 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 196728 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 212888-214486 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAN01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3036 NODE_2_length_271828_cov_94.500550, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 212888 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 212949 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 213010 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 213071 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 213132 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 213194 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 213255 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 213316 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 213377 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 213438 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 213499 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 213560 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 213621 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 213682 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 213743 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 213805 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 213908 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 213969 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 214030 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 214091 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 214152 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 214213 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 214274 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 214335 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 214396 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 214457 29 96.6 0 A............................ | A [214483] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //