Array 1 13380-13804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCGD010000025.1 Megamonas funiformis strain MSK.7.16 AHGCFIAC_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 13380 30 86.7 36 ..A..TA....C.................. TTTTTTATATATTCACCTCTGTTGTTAAATCTCCAT 13446 30 100.0 36 .............................. ATGTATTAGATAAACTTGTTGAGAAAAATTATATTT 13512 30 100.0 36 .............................. ATATATTGGAAATACTGTGGTCCGTACTATGTGGCA 13578 30 100.0 36 .............................. TCTGTAGCTTTTTCCACTATAAATTTACCTTTTATC 13644 30 100.0 37 .............................. CCATGGAATTTGGGAAATTTAAATACCTTTTATACTA 13711 30 100.0 34 .............................. AGAATACAACATTAAAAATGAGGGTTTTTTCTGG 13775 30 96.7 0 ..........................A... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : AGCTTTTTTATTAATAGCTTTATCTGTAAATAAAAATTCATCATCAAATACTAGACTTATATTTAAATTTAACTCATCTAATTTTAATCCTTTTATGTCTATATAATCACAGTTTAAAATATCAGTATATTCATTTACAGACATTTTCTTATCAGTAATTATACGTTTTAATTCTCCATTAGATTTCAATAAAATATTTACTTGTTTCATATTTATCTTCCTTTCTAAGCGACTTTTTTTGTCGCTTTTCGCACGTTTTTATAACAATGAAAAAAGCTATTACAAGGACAGCTTTACGCTGCAACGTTTATCCTTGTAATAGCTTTTGTAATTGTTATAATTAAGCGAAAGAAAAGCAATATATTCTATATATCATTGTTCTATTTTTAAAATATTATTTTCATTTAATAAGTATTTTACAAATATAGTATATTCTATAAAAACTGATGAGTAACTAACTGGTAGTAAACAAAACTATCATTATAGCCTTATTTATCAAG # Right flank : TTAACTCTCTAGCATTAGTATAACAATGAAAAAAGCCTTAGGAACTGACCCTTCCTAAGGCTTTTGTGCGTCATCATGAGTTTGACTTCGTCTATACTTAGTATAATATATTACATAGATTTTGCAATACAAAGCTTGTTATTGTGCAAATAAATATTTATGATAAACTACATCCTAAAAATCAAATAAAAACGGCAGCAAAATGGCAACAATAAAAAAGTACCTGCATAAAACAGGCACTTTTATAAATAAATATACGAATATTATTTTCTCACAAAAGTCATAATTATAGTATCTTCACTATAATTATGCTTCATTTTCTCATAGTCTTTAGCCTCAATAGGTGTTATAACTACAGTCTCTAAGCTAGGATTTAATTTATTTACCTTTTCTACTACGCCTAAATGTTCATCACCATGAAAACTTCCTTGTACATGGAGGACTTTTGTATCTTTATGTTCCTTTAAAAATTCAACAATACTTTCCGCCATGGTATCGTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 3753-2989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCGD010000023.1 Megamonas funiformis strain MSK.7.16 AHGCFIAC_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3752 36 100.0 30 .................................... AGGTCAGCTTTTCTCTTCTATTATCTATTT 3686 36 100.0 30 .................................... TGGCAATAAGACATATATTAAAGGTCATAT 3620 36 100.0 31 .................................... CAAGTGGATATTGAAGTTTTGGGGCGCGATT 3553 36 100.0 30 .................................... TTTAATTATTATATTTATTCATTTGTTCGA 3487 36 100.0 30 .................................... ATTTATCATCAATAGAATGTTTATTCAATG 3421 36 100.0 30 .................................... AAAGAAGATGAATAAATTACAAAAAGATTT 3355 36 100.0 31 .................................... CTAGGAAATACTAGCAATCGTGAAATTAGGT 3288 36 100.0 30 .................................... TTCATCATTTTTATAAATACTATGCGTTAA 3222 36 100.0 30 .................................... TGTATATTCATATTAAGTATGATTTTCTAA 3156 36 100.0 30 .................................... ATATAAATAATTCTGTTTCTGGCGCTCTAC 3090 36 97.2 30 ...........................C........ ATATTAGCTTTTATTTTAATAGTAATTAGA 3024 36 91.7 0 ..........................TC......A. | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 99.1 30 GTTTTAGTATCATGACATTTTTAGTACTTCTAAATC # Left flank : ACTTATTAAATCATACTGTATTATTAAAAAATAAGCAGTTTAAATTATATATAGCAATAGATAAATATATAAATAGTTTTACTGCATATATTAATTCCCAAAATATTGATAACTTTTTACTTCCAAAAATAGATTATGAGAAATAGATTTATGAGACTAATATTAATGTTTGACTTACCAACAAATACATCTACAGATAAAAAAAATTATAATACATTTAAAAAACATATAGTAAATTTAGGGTTTTGTATGTTACAATATTCTATATATACTAGAATTGTAAAAAATAATGATGATGCAGACAAATATATACATCGTTTAAAATACAACATTCCACCTAAAGGCTCTATTAGATTATTAAAAATTACAGAAAAACAATATAGTAATATGTTAATATTACAAGGAAATATTACTTATTCTGAACAGCTTTTAGAAAATATAAATCAAATTATCGATTTATAATAAATTAACATATATGTATTAATTGATAGCATGAAGTA # Right flank : AAACATTTAAAGAGTTAGTTTCATTAATTTATATTACTACATTGCAAAAGAAATTATAAAAACCTCGAGAAAAATAAAATTTCTCGAGGTTTTTATATTTACTATATAGTGTTGCATATAACATCAAATAGAAATTATTGATGTTCTTTATCTTTAAACAAAATGCATTACTCCTTTCTATTATTTTCTTTTTCAGCTTTAGCATAAATAATATTCTATTTACTAGATTTGTAGCTTTGTAAAAATTTTTGAAGTTCTATAAATTGATTTGTTATTTCTTGCATACAATAATAATAATCTTTACTATCCTTCATTTTTCCTAACTCTATATAAACATCAAATAATTTATCATATTTTATTAGATAACTATATATTCTCTTTACATCTTCACGTCTAATATTATATTTATTATAATAATATATTTTAATGATATTCCATATGTCAGAACGTATATTTCCTATTATCTTTCTATCATCATCATATTGAAAAGTATTTTCAAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTATCATGACATTTTTAGTACTTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 100617-101437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCGD010000004.1 Megamonas funiformis strain MSK.7.16 AHGCFIAC_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 100617 30 100.0 36 .............................. GCTGAAAATAATCTTGATGATACTTCAGCTAAATTT 100683 30 100.0 39 .............................. TGTATTAAGCTAGATACCCTTATCTCCTGGAGTGGTATT 100752 30 100.0 35 .............................. TGTAGCTGGGTTGAACGTGTTGCAGATAATGTATT 100817 30 100.0 36 .............................. TTACTTGGAGATTTAAATGGAACATCATCATAAGAA 100883 30 100.0 37 .............................. TAAAAATCTACGTGTAATTGCCACGCTAGATAATTAA 100950 30 100.0 36 .............................. CCAGTGAAGAAAATTTCACCACCCCATGAAGATATT 101016 30 100.0 34 .............................. AAAAAGGAAAAGATGTCGTTGATAGAAAGGTTGA 101080 30 100.0 34 .............................. ATAGTCGTGAATTAAATTCTATCAAACTATAAAA 101144 30 100.0 38 .............................. TAGAAAATGACGATATACTTAATATAGACTTTTACGGA 101212 30 100.0 36 .............................. TCTGTTTTATCCTGACCGCATGGATCGTGATGAAAC 101278 30 100.0 34 .............................. AGTAAGACAAATAATGGGTGATTTAGGTGGCGAT 101342 30 96.7 35 ...............T.............. TTTGAAAAACTTGATTTACTGTTAAATAAAATGTT 101407 30 93.3 0 ..........................T..A | A [101433] ========== ====== ====== ====== ============================== ======================================= ================== 13 30 99.2 36 GATTAATAGAAACAAGAGTTGTATTTGAAT # Left flank : CAATAGATATCAATACAAGAAAACCATTACTTGGCAATATCACAGGTGGTCTTTCTGGCCCTGCTGTAAAACCTGTAGCACTTCGTATGGTATGGCAAGTAGCAAAAGCTGTAAACATTCCAATCATTGGTATGGGCGGTATTGCAAGTGCAGAAGATGCTATTGAATTTTTGCTTGCAGGTGCAACAGCAGTCGCAGTGGGAGCACATAACTTCATTGATCCATCAGCATTAAAAGTAATTGCAGATGGTATCGCTGAATATATGCAAAAACACAATATTGAAGATGTAAATGAACTTGTAGGAGCATTACAAGCTTAAATAAAAAATTACCAAGTGAATTTTTACTAAATAACCTATAAAGCTAAGAAATATAAGCTTTATAGGTTATTTTTTTATATAACTAATAAAAATCAAAATCAGCTGGTAAAATTTTTTTATATCCTTGAATAGCAAGATTTTAGAGACTATAATAAAAAAAGAAATATTAATAAATATAGG # Right flank : AAAAACTTATTGACAGTGGATATAGTTTGTGATATATTAAGTTATGTTGTATTTGAGATGCAACGTATTCCACAAGAAGAAGTCACCACTTCTCACCTTATGGCGTGCTAGTCACTAGGGTTACTAATTAAAACAAAAACGTTTAACGTATATTTTAATTTGTAATATCAGAGGGTGACGTGCGTCATCCTCTTTTTTGTGTATATAATAAAAATAATATATAAATAATGAGGTGTTTTCTATTAGTAAAGAAACTTTAAGAATTAATGGCGAAATCCGCGCTAGAGAAGTTCGTGTGACAGATGCTCAGGGAGAACAGCTTGGTATTATGTCTACAAGAGATGCTCTTCGTAAAGCAGAAGAAGCTCATTTAGACTTAGTAGAAGTTGCTCCAAAAGCAAAACCACCTGTTTGCCGAATCATGGATTTCGGAAAATATCGCTATGAACAACAAAAACGTGAAAAAGAAGCGAAGAAAAAACAGAAGGTTATCAGTGTAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGAAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 131459-130773 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCGD010000003.1 Megamonas funiformis strain MSK.7.16 AHGCFIAC_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 131458 31 100.0 33 ............................... TTTTTTGTATCTTTACTTCACCTTCCCATGAAC 131394 31 100.0 34 ............................... GGGCTTTTTCTATGGCTTCTCGATTTATCTTTTG 131329 31 100.0 36 ............................... GAAATTTTTACCCGTGCCACTTATTGGGAATGGTTC 131262 31 100.0 34 ............................... TGTCATATCGTATATTATCTAAACAATCTTTATT 131197 31 100.0 36 ............................... AAGTGATTGTCAATATCCCGCAAGCGAGATACATTA 131130 31 100.0 34 ............................... AAATAATAATTGGTGCGTCTGGATTATTCTTATA 131065 31 96.8 33 ................A.............. AGGCTACCCAAGCAGGATTTCTGGCAGATTTTA 131001 31 96.8 35 ................A.............. GACTAAGTAATACTACATCACCAACTTGACAGGCT 130935 31 96.8 35 ................A.............. TATCCTGTTCCATTTAATCACTCCCTATTAACCAA 130869 31 96.8 35 ................A.............. TCCTAGTTTCATTAGCTACTTGCTCCTCCTCTTGC 130803 31 80.6 0 .......................CAAA..AA | ========== ====== ====== ====== =============================== ==================================== ================== 11 31 97.1 35 ATTTAACTTTAACAAGTGTTGTATTTGAATT # Left flank : TTTCATAAAAGTATTATATAACTATTAAAAATATAATACAATAAAAAACAATGATATCGAATCATTGTTTTTTAGCGAGCTTATATCCCCATAAATAAATTTAGGGGCTTTACGCTCGCATTTGGTAAAAACTTATATAAATATTGATATTTTAACCTTTATAAACTATAATTATTTATAAAAGTATTAATTTTACTGG # Right flank : TAAAAGCTGTAACAAAGAGAATTTCTCAATGTTACAGCTTTTTTACTAATTTTATAATGTGGAAAAGAAAAAGTTTATTAAAATTGGTACGGCTACTGAACATAATACACCATTAATTACAGATATAATAATAAATTCTTCACTACTATATTTTATAAGCATAGGCAAAGTGGAATCTTCGCTTGTTGCACCTGCTGCTCCTATAGCTGCAAATGTATTTAAATATTTTACTAAAACTGGAATCATCATAAAAGCGATAAATTCTCTCATCAAGCTACTCAAAAAGGCTATTGTGCCTATCTGTGCATTTGCTAGTGATTCAAGCATTACCCCTGATAAACTATACCAGCCCATAGATGCACCAATAGATAAACTATATACCAAATTCATATCAAAAATATAACTGCAAATAAATCCGCCAAAAACAGACCCAATAATTACACCTATAGGAATCAATAATATTGTCAAATTATAATTTTTTATCTTCTCAATTATTGATT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAATT # Alternate repeat : ATTTAACTTTAACAAGAGTTGTATTTGAATT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 72571-72931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCGD010000008.1 Megamonas funiformis strain MSK.7.16 AHGCFIAC_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 72571 30 100.0 36 .............................. AGAGAAAGTAGTTCATGGTAGTTTATCTGATTTTAA 72637 30 100.0 37 .............................. GAGTTATTTTTGAAGATGAGGATAATAAAGTATCCGA 72704 30 100.0 36 .............................. CTGTATTTTCTACCAGCAAATTTAGCACCGCCATCT 72770 30 100.0 36 .............................. TTTTTTATATATTCACCTCTGTTGTTAAATCTCCAT 72836 30 100.0 36 .............................. ATGTATTAGATAAACTTGTTGAGAAAAATTATATTT 72902 30 83.3 0 ....................TA.A..A.G. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.2 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : GGTTCAGGTTGTGCTATTTCCCAAGCTTCCACAGATATCATGATTGATTTAATGCTTGATCAACCAATCGACAAAGCTAAAGAATTATGTCGTTTATTTATTGGCATGGTTCAAGGCACAATCACTGATGAAAAAGAGCTTGCCCCTTTAGATGAAGCTCTTACCTTTAAAAATATATCCAAAATGCCAGCTCGTGTAAAATGTGCCGTACTTAGCTGGCATACTATGGAAACAATCCTAGACAAAGCCCTCCAAAGCTCTCAATAAATAAAAAGTATCATCTTGATTTAAATAGTTCAAAACTAAAATTAAGATGATACTTTTTTATTTTATCTAAAATTTACCAACCAAAATCAAGAAAAATCTCGCTAATCCTTGATAAATAAACATTTTCACTAAATCCCTTCAAATCTCATTATTGCTGGTAAAAAATAAGTAAAATCCTTGTTTATCAACACTTTTAATAGTACAATAAAATCATAAAGATTAATTTTTCTAGC # Right flank : TAATTAAAGAAAGCCTTTAAATATAAGTATTTAAAGGCTTTCTTTTTATAAAAAATCTCTAAAAAACACATAAAACTCTTTAAAAATTAAATAGTAGTCAACAAATAGATAACATTCATCACATATAATACATACTATTTAGATTAAATCAATAGCTTCTTTTAATTGTTCAACGGTTTTGTGTGTATAAACTTTTTCATTAATGGTTTTCCCTACATGTCCTAATATTAGATTTTTTATATTTTCTTTTACATCCGCATTGTCCAATAAGGTATTACAGGTATGTCGTCCATCATGTGGAAGATGGTTTTTTATAGCTGAAATTTCTGACTTACGCCATTTATAAGCTAAAGTAGCATATGGCAATCTTTTTTTATTACTTGTAATTAGATATGGATTATTAAATTCATCAGCTATATAATAAAAATCTTTTATAAAAGGATATATTTTTTCTGCTATAGGAATACGTCTATTTATCCCCATACTTGTTTTTGCTCCAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 12157-11600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCGD010000041.1 Megamonas funiformis strain MSK.7.16 AHGCFIAC_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 12156 30 100.0 35 .............................. TCTAATTGATGTACATAGTAAATACGCTTTCCGTC 12091 30 100.0 36 .............................. TGCGTATATCCTGCTGTCTTTGCCAATGTTTCAAGG 12025 30 100.0 36 .............................. CTGGTAAAGATACATCTAAAATGGCAAATATAGCCA 11959 30 100.0 36 .............................. GATTGACTATTATTTGCATTTTCCTTATTAGAACAA 11893 30 100.0 36 .............................. TATCTATTTTTAAATTGCCAAACATAATTTGCGATA 11827 30 100.0 37 .............................. TGAACCGCTTCACAGATAGTTGGCGAGCCCTAAATGG 11760 30 100.0 35 .............................. GACTTTTATGAAAATCAATCCTTTTCTATTATAAA 11695 30 96.7 36 ....................A......... TCCATATAATAAACTTGTATTTCACGGATAGTTCTA 11629 30 93.3 0 ........................C.A... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.9 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : TGAAATATCTACCCAACAATTAAATAGTAATAGGTTATTATCTGAAAAACAAATCATTTATATGTTAAATGTATTCTATAATAAAAGAGTTGATGTTTCTTTCTATAATCAAATTATTGATTGCTTTATCTATAAAATTTATATTTACTCCGACAAAATATGTATTGTCTATAACCTGAATAATAGTGATAAAGACGTGACTTACTCTGATATTAACGAACTATATAAAAGTTCGCACCTTAACTCATGCGGTTCACCATATGATTTATAAAATTAAAGCAACTATCAATGATAGTTGCTTTTTGTTTTTTGCTTAATAAAATTTTATTTACCATAAAATTACCAGCTAAAAATAAACAAAACTCCTCTAAAGCTTGAAAATTAAACCTTTTTATAAAATCTCCAAAAATCCTATTATCGCTGGTAAAAAACAACTAAAATCCTTGTGTATCAATACTTTTAATAGTATAATGAAAATCATAAAGATTGATTTTTCTAGT # Right flank : CTTATTATTAAAAAATTATAAAAGGCTTTTAATAGATTTTGTCTTCTATTAAAAGCCTTTTTTTATTTAGAATTATTTTTCAATTCCTCTAAAAATTTCTTATCATCTTTGCTTAATTCTACTTTTTCAAGTAAGTCTGGTCTATTTGTATACGTAACACGCAAAGATTCTTGTCGACGCCATTTTGCTATTTTAGCATGGTCTCCTGAAAGTAGTACATCAGGTACGCTAAGACCTATATACTCACGTGGTTTTGTATATTGTGGATATTCTAGAAGTCCATTATAAAAAGAATCTGTTGGCGCAGACTCTCCAGAGCCTAATACGCCTGGAAGCATTCTTGATACAGCATCGATTACCACCATAGCAGGAAGTTCTCCACCTGTTAATACATAATCGCCAATAGAAATTACTTCATCAGATAAATTTTGTACCACACGATTATCAAAGCCTTCATAATGACCACAGATAAATATTAACTGATCAAAATTAGCAAGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //