Array 1 225110-226234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDW01000002.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000199 CFSAN000199_contig0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 225110 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 225171 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 225232 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 225293 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 225354 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 225415 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 225476 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 225537 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 225598 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 225659 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 225720 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 225781 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 225842 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 225903 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 225964 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 226025 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 226086 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 226147 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 226207 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 242357-243668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDW01000002.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000199 CFSAN000199_contig0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 242357 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 242418 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 242479 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 242540 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 242601 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 242662 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 242723 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 242784 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 242845 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 242906 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 242967 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 243028 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 243089 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 243150 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 243211 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 243272 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 243333 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 243395 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 243456 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 243517 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 243578 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 243639 29 96.6 0 ...............A............. | A [243666] ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //