Array 1 1231-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKZ01000012.1 Cronobacter dublinensis 1210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1230 29 100.0 32 ............................. GGATTACCAGTCATCCAGTTGTAAAACAGGCG 1169 29 100.0 32 ............................. CGTTTGTATAGCGAGTTCGGATACCCGCTTGA 1108 29 100.0 32 ............................. TGCGCATTTGTGTAAGCCAGGCTTTGCTGGAT 1047 29 100.0 32 ............................. ATGGCTGGTTGATGCAAAGTCCAGCCATCATG 986 29 100.0 32 ............................. TGACCATATAACGGACCTTTGTCGGCATTACC 925 29 100.0 32 ............................. GTTGATAATGAGTCGTCAGAGAATACTTCTTC 864 29 100.0 32 ............................. TTACGTCGTGTTGTGCAGCAGTACCGAATTCG 803 29 100.0 32 ............................. GCGATAAATACCCTGGCTGTAACGCCAGGTGC 742 29 100.0 33 ............................. GATAAGCTCCCCACGTCGCGAAAAGGCCCGGGG 680 29 100.0 32 ............................. AGTTCTATTCTGGAGGGCGCGGGCGTCGGGCA 619 29 100.0 32 ............................. GTGCGATTAGTGAACTTCCCTGAGCTTAGTGA 558 29 100.0 32 ............................. CACCACGTGAGTGGAGCCTTGACCGCCGTGAG 497 29 100.0 32 ............................. GACCCGCGCGCCGCTACCAGCTCAATCGTAGT 436 29 100.0 32 ............................. TATTCTTTCCCGCCAGCATCAAAATCGGCTTT 375 29 100.0 32 ............................. ATGGAAGGACTCAAACCGTATACCCGACAGAC 314 29 100.0 32 ............................. GTCTGTCCGCCAAATTTGGTGCCGTCAGGTAA 253 29 100.0 32 ............................. ACAGATCACAAAAATAACGAGTACGGATTTGT 192 29 100.0 32 ............................. CGATTCATTGAGTTGAGCGGCACCCAAGACGG 131 29 69.0 13 .................ACAACGTC..G. CGCTGGAGGCGGA Deletion [90] 89 29 100.0 32 ............................. TCGATTCTCTCAACTCTCAGTTTGCAGCCAAC 28 27 93.1 0 ...........................-- | G [7] ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 31 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCCGGCGACATCGAACCGCCGCAGCCCGCGGCGGATATGCTGCCGCCTGCTATTCCACTGGCGGATTCGCTGGCTGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCTATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTCGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGCGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGTATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGCTCTTTAAAAATATGGAGATGTAATAAAAAAGTTGGTGGATTGTTGGGTGTGAAAAATTTCCATATAGAACAGTGATATAGTTTTAGA # Right flank : C # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9-281 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKZ01000007.1 Cronobacter dublinensis 1210, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 ............................. AGCGCGCGGGCTTTCAATCAGCCGCTGCTGCT 70 29 100.0 32 ............................. CCAGGGTAGTTTTTCACCCGATACCATAAAAT 131 29 100.0 32 ............................. CGAATAAATTGCTAACCATGCTGCGCCTGACC 192 29 100.0 32 ............................. CAAGAGCGATATTGGTTACCTGGCTCATACTG 253 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGTTTGAG # Right flank : GAACCCGTTCGCCGCGGCGCAAAAAACGCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTAACCACCCGCCAGGGCAATCCCTCCCAAACCCCATATTCTTCAGCAGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTTGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACTCAAAATAACGGACTGGTGCTGGTGGATACTGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTATCGCGAATCATTAACGGCGCTGCATCATATTAAGTCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 826-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKZ01000182.1 Cronobacter dublinensis 1210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 825 29 100.0 32 ............................. CGTCACGTACCGGCATTCAGACATACCTCGCC 764 29 100.0 32 ............................. GCCTGTTAACGGTGACCGAGAATGGCTGAGAT 703 29 96.6 32 ............................C CCGTCGTTCTCGCCGTGAATAACAAAAATGGC 642 29 100.0 32 ............................. TTTCCGCTTTCGTCGGCAGGCGCATTAAGCAG 581 29 100.0 32 ............................. ATGCTTACTCTCCAGCGCTGGGCGGCGGAAAT 520 29 100.0 32 ............................. CGCGTCACCATACCCGCCAAAACAACTGTACA 459 29 100.0 32 ............................. CTGACTGTGAGTTAACAAAGTCAGTCATGTAT 398 29 100.0 32 ............................. ATTTCGATTCTGGTAGCCATATCTCACCAAAT 337 29 96.6 32 ............................T TCCTGCTACCGCCTTTCGCTATAATTGCCACC 276 29 100.0 32 ............................. ATGATATAGGTTAACCTATAATTTATTTCATC 215 29 100.0 32 ............................. TGGCGGATAATCGCGCGCTGGTCAGCCTTGCT 154 29 100.0 32 ............................. ATTTTTAGCGGTACTGACGGAATTAAGTTTGA 93 29 100.0 32 ............................. AGCGCGCGGGCTTTCAATCAGCCGCTGCTGCT 32 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACATGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAACCAGGTGATTACGCTGGGGCCCGAAGACGGGGTGGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTTACCGAAAGCGAACAATCCGGTAGATGTTATCGGCTCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAATTTTAAAGAAAACAGCAGGTTGTTTTTAGA # Right flank : GCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //