Array 1 98514-95301 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACVO01000003.1 Rothia mucilaginosa ATCC 25296 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================ ================== 98513 36 100.0 38 .................................... CTGTAGCGGAAATGCCTACAACCTGGCAGTTTGCCAGC 98439 36 100.0 34 .................................... CCATACCCGGTCATCACACCATCACCGGTCACCA 98369 36 100.0 38 .................................... GTCGCGGTGCTTGCTCTTGGCATGGGTGGGGGCGCGAG 98295 36 100.0 36 .................................... TAAATACTCTTAAATCGTCGCCCTGATTTGTCGTGA 98223 36 100.0 37 .................................... GCCGAGGAGGTTGCCTTCTCTGTAGCATTCGGCAATA 98150 36 100.0 36 .................................... CCTGTGTGACCGACCGACCGACCGACCGACCGACGG 98078 36 100.0 38 .................................... TCGATGGGGGCGCGTCCCTCCCAGCCTGGAGCCCTGGA 98004 36 100.0 37 .................................... CCTGTGTGACCGACCGACCGACCGACGGGTCGATGAA 97931 36 100.0 36 .................................... TGCAGAAACCACATTCTCTATTGCCGCGAGGTACGC 97859 36 100.0 38 .................................... GGCATCGTCGGCACCGACACCAACTCTTTTTGCCATGC 97785 36 100.0 37 .................................... GGCAGACAGTGCCGCAAGCTGGGTAGCTGCCGCGCCA 97712 36 100.0 35 .................................... CATCGTCATCGCCTGCCTTCTGCTCTCACAAGAAC 97641 36 100.0 39 .................................... GCCCGCTACGCCCTCAAGCAGGAATACGGCGCCGCTAAG 97566 36 100.0 35 .................................... CTTTGATGCAATCGCTAGCTCCACTGAACCTGGGA 97495 36 100.0 34 .................................... GTTCCCCACGGACGTCTTCAAAGCAAACGGCGTC 97425 36 100.0 35 .................................... GCTTGCGGGTAGACAGGCGGAGTTTTTGCACGTCC 97354 36 100.0 36 .................................... TAACGCGGTCGCTAAGGCGTCGGAGGCCGCCGGTAA 97282 36 100.0 35 .................................... AAGTGGCACTCCAGTTCAGGATGCTCTGGCAAAGA 97211 36 100.0 35 .................................... TGTTCAGCTCAACGTTTTCTGAGAGAGCCACAGGA 97140 36 100.0 38 .................................... CGAGCACGTCGCAAGGGCGTTAAGGGCGTGCTGGATAA 97066 36 100.0 37 .................................... GGCGCTGTATAATCGCGCGTACTGGTTTTTTGCACCC 96993 36 100.0 34 .................................... TTTGACATGCTGCGTGAGAAGGTATCGGGCTGGA 96923 36 100.0 36 .................................... TACTATGCCGCCGTATTTCAGGTATGGAGTAAACCT 96851 36 100.0 35 .................................... CCAGACCCGGCGCATGAGGAAACGGCGCAGCAGGC 96780 36 100.0 36 .................................... CGTGAGCCTCAGATGCTGCCGCTCCAGCCGGGACAC 96708 36 100.0 34 .................................... CCGCATGCTTATTCGCGCTGCTCAAAAATACGGC 96638 36 100.0 36 .................................... CGGATACAAGGGTGTGGCTAGGGTTTGCCTTCTGTT 96566 36 100.0 35 .................................... ATGCTGGCGAGGCATTGCCAGAGCCCACACGACGC 96495 36 100.0 36 .................................... ATCTCGAATGAGCGAGTTTCTGCGGTGAAGTATTTC 96423 36 100.0 35 .................................... CCAATACCCTCACCTTTCGGTCCACGAAGCTCGCG 96352 36 100.0 35 .................................... CAGGGTTCAGGGCGTTGATGGTCAGTGGTCTTCGA 96281 36 100.0 41 .................................... ATGCTGAACATTCCCAACAAATTTATTCGCGACGAGTTGAG 96204 36 100.0 34 .................................... TGTGAGTAAAGGTTCGGCAATTCGCGCCACCTGC 96134 36 100.0 37 .................................... TTAGGTAGACACCAATGACCTGGGCGAAATCAATCCC 96061 36 100.0 36 .................................... CTGGCCCGCCCAGGGGTAATCATCCGTGCCGCTGGT 95989 36 100.0 34 .................................... TTGACGTTGACCGCGTAACCATCCTGCACACGAA 95919 36 100.0 36 .................................... AAAAGTCCCGCGGCTAATTGCAGAACCAGCCCGGGA 95847 36 100.0 35 .................................... AGCCGCGCCATGCTGGAGCGCACTGCTGCACTGGT 95776 36 100.0 37 .................................... TCAGATTCGCCGAGCATGCCCTCACGAGCCAACGCAG 95703 36 91.7 36 ...............T......G............C CGCGCAATGATGACAACCTCCATCAACATCTAAACC 95631 36 86.1 38 .............C.G...A..G............C GTCGTGATTGCCAACAGGGTTCAGGGTACAGATGGTCA 95557 36 75.0 38 ......A.A.AGA..T.TG................C ACAAGCTCAGTTGCTCCGGCGGATGCGGTTATCAAGGA 95483 35 88.9 112 T..............T......-............C TTCGTGGCTAATGAGTGGACTTCCTCTAGCGGTCGTTCCATTTCTTCGCTTTCTAGCAGAGACTTTCATTGAGGCGGCCGAATGCGGCGGGAATGAGCGGCTACGGTCACGT 95336 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================================================ ================== 44 36 98.7 38 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : TTTTGACAAGGTGTTTACTGAGGAGATGCTGGCTGGTGGTTATCAGAAGAAGTATTTCCGTGCGGTGTCTCGTTTGACTGCGTTGGCTCGTGAGGGCATGCTGGGTGAGGAGGCGGAGCGCTAGTTCCGCTGTTCGCCGGGGCCGAGCTTTGGCCGGCTCGGGTTTTGATGCGCTGTTCTTTCTAGTCCCGTGAGACTCGAAGCTCGCCCGGTTTGCATGGTTAGCTTGGTTAGTCTGGTTTACCTGAACCGCGCCAACCCCTCTCATACGTGAGGACCCTCGCCGGGTCGCTTAGGAAGCACCCGGCGGGGGTCTTTGTGTGAGCGAGAACCTGGTACGTGACGGGAACATGGCGTGTCGCTCGCATGGTTTCTTCCCTTGCCAGGGAGTTATGCGGGGGTAGATGTGGTTGGAGTGTATAATTTTGCGTGTAGCCTCCGCGAGGTTCTCGCGAAGCACCCGTTTCTGCCGCATGGTTGCGGGCTATTTTCGGGTAGCT # Right flank : CTCATGCACTGAGTGAGACAGGTGTATATTATGAGATATTCTCTCTATAAGAGAGAGACTTGCATTAAGGCACAACGTGGCCGCACCAACGGCAAGTATCGCCGCTGGCTATTTCCCTACTTTTTCGTAGGTACTTTCATTGAGGCGTAGAGGGCCCGACCATTGGCAAGTAGCTGTCCTCGGGATTTCCCTTCCTTTTGGGAAGTGCTTTCATTGAGGCTTTGTCGGCCATTTAAACGGCTGTGTCGCTGATGCCGATTTCTTCGCTGTCTAGCGGAGACTTTCATTGAGGCTCGCCCATCGCGCGGATTGCCGCCTGCGGGTCATTCAGATTTCTCTACCTTTTCGTAGGGACTTTCATTGAGGCGGTTCAGGTTCAGGGATAAAAGGCTCCACGCTCAGATTTCTCTTCCTTTTTGGAAGGGCTTTCATTGAGGGCCGTCGGGTGTGTCTGAAACTCACGCCTGGGTAATCTTATCTTCGCTTTCAAGCGGAGACTT # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //