Array 1 1828061-1826045 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFBS01000003.1 Lentilactobacillus buchneri strain LA1167 LA1167_to_NC_018610, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1828060 36 100.0 30 .................................... CTAGATGAGTCTAAAAGCTTGCTTCAATAC 1827994 36 100.0 30 .................................... ACTAGTTTTTTTAAATCCTTCAAATCATTG 1827928 36 100.0 30 .................................... TACTGGTCATCGGCTTTGGTAAAGGTGTCG 1827862 36 100.0 30 .................................... TTTTAAACTAATGAATCATAATATATCTTT 1827796 36 100.0 30 .................................... CGTAAATTGGAACTTTTATAGGTCGATCAA 1827730 36 100.0 30 .................................... GAAATAAGCAGCCTCATTTGAAGCACCATG 1827664 36 100.0 30 .................................... AAGGTTCAGGTGTCTCACACGCTGAACTAG 1827598 36 100.0 30 .................................... TGAAATTCTTACATTTCTCCAAAACCAACA 1827532 36 100.0 30 .................................... CAACAAAAAAAGCGCTCCGCAACGGCCATT 1827466 36 100.0 30 .................................... CCAATAACAAGCTGTACATTCAAGACTATG 1827400 36 97.2 30 ................................C... CCCTGCCATTAATTTTCTCTAGTTGCTTAG 1827334 36 100.0 30 .................................... GGTATTCGCCCGGGTTCTCATCAACGTTGG 1827268 36 100.0 30 .................................... TAACGCAGCTAAAGATAATCGACAGAATTA 1827202 36 100.0 30 .................................... TGCCATTGCAAAATACTATGCCCAATCCAA 1827136 36 100.0 30 .................................... AGTACTCAACTGCCAATTTGTCAACTAATG 1827070 36 100.0 30 .................................... TATGCACTTAATTTTGTCACTTCGTCCGCT 1827004 36 97.2 30 ...................................T TCAGGAAGATTCAAATAATCTTCAATCAGA 1826938 36 100.0 30 .................................... GAAATTCGGCTTTGAATATTCATTAGTTGT 1826872 36 100.0 30 .................................... CACTTGAGTATTTGATTAACCCTTTACTTT 1826806 36 100.0 30 .................................... AAAATGTACCACACATCTTGCATCCACATG 1826740 36 100.0 30 .................................... AAATTGGCACAGCTGTCGGCAAGATTACGA 1826674 36 100.0 30 .................................... TATTACAAGATCGAAACACGTGAGATCACA 1826608 36 100.0 30 .................................... ATTCGTTGTTGCAGATGTTGCTGGTTCAGC 1826542 36 100.0 30 .................................... CATAAGGTGGCTTAGGTTGCCAGCCGTCAT 1826476 36 100.0 30 .................................... TTACTAGAATAAGGGGCGATCAATATGGAA 1826410 36 100.0 30 .................................... GAACCACTAACGAAATCACCTACTTGAAAG 1826344 36 100.0 30 .................................... AGTACTTTATTGATAATGCCGACTTATTTG 1826278 36 100.0 30 .................................... CTTCACTTCTAAACTGCAGTCCAAAAGCAA 1826212 36 100.0 30 .................................... TCGGCGGGCTGGATGATTCTCAAGTGGACG 1826146 36 100.0 30 .................................... GTTTCTAAACGAATGTCATGCCACGTAATT 1826080 36 88.9 0 ...............................G.GAT | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.5 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : CAGCGATGGTGTCAGTGACAAGTATAATTCTGGCATTTTTAAGCAATTAGAGGCTGTGTTGACTGATGATCAGCGTAAATCGATAACTGATATTAATAATCAATTGTATACGGTCGTCCAGCAGTGTTTGTTTATGATCGATTTACCTCTGGAAGTCACCTATGATTGGGATTTAAAGAGGCTGTTTAAATACTGTAAAATTCACTTTAACACCGATGCCATGCAGAACCCTTATGCTATAATTGAATCAATTATCAAAATTCATTTAGAGTGCGGATTGAAGTCGGCTGTTGGTTTAACTAATGTCGCTCATTATCTTAATCAGCAGCAATTCATTGATCTATCCAACCTCGCAAGTTCCACGGGAATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACCAATTGCGACTTTTACTACATCGACGAGGACTTTGTTGATTGGCATTTATAATGCATTAAAATTCGGTTATAAAAAATCG # Right flank : GGTTTCTCAACAGATCATTCATTCTGGATCATCTTCCACCACAAAAAATAAGTTCTCCGCCTAGTATTTGCTAAGCAGGGAACTTATTGTGTTTATTTATTTAACAATCGACTTAGCCAACGCATACCCCAGCTTCTGAGCTGTTTGGGCAGTTGGATGAATCTCATGATCCTTCAAAGTGATGTCCTTGTTGCTGTCGGTGATAATGTTGGGTGCGATCTGTTGGAAGTTGACCACTTTGGCGCCCATTGACTTGTAGAGCCTTGCTTCAGCTGCCCGCAAGTCGTGGTAGGTGTAGCCATACATATCACTCATGTTGTCACGATTCATGCCATTGGCGTCAAACCGTGAAATTGGTAGGATACCGTAAATCTTGGTGGACGGATTCAACTTTTGAATCAGCTTAATGTTGTAGCGCAGGTGGCGCATCACATTCTTCAAACTTCCCGAACCGGAATAGTTGGTGTAATCATTGGTCCCGATATGAACGAAGATGACGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1846803-1846635 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFBS01000003.1 Lentilactobacillus buchneri strain LA1167 LA1167_to_NC_018610, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1846802 36 100.0 30 .................................... GGTCGAATGGTAAGTCAAGTTTATTAACTA 1846736 36 100.0 30 .................................... TATCCTTTACATATCCAACGATATCCATTG 1846670 36 77.8 0 ...........................AAGCTGT.T | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 92.6 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : TAGTGATGGGGTGAGTGAAAAGTATAGTTCCGGGATTTACAAGCAACTTGAAGCTGTATTGACTGATGATCAGCGTAAATCCATAACTGACATGAACAGTCAGTTATATACCCTTGTTCAGCAATGCTTATTCATGATTGATCTACCCTTGGAAGTCACTTATGATTGGGATTTAAAGAAGTTGTTCAAGTACTGCAAAATTCATTTTAATGCTGATACCATGCAGAACCCATATGCTATAATTGAATCAATTATTAAAATTCATTTAGAGTGTGGACTCAAGTCTGCGGTTGGATTAACTAATGTCGCTCATTATCTTAATCAGCAGCAAATAGCTGACTTATCCAAGCTCACAATTTCCACGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACTAATTGCGACTTCTACTACATTGACGAGGACTTTGTTGATTGGCATTCATAGTACATTAAAATCCGGTTATAAAAAATCG # Right flank : AAAATCTCTTAAGTAATAGTGCTAAAAATGCTAAAACGACCATTTGCAGACTGGTGGTTAATTGACGCTCACAATTTTTCCAAAGTCGCCGACAATTCTCTAGCCAACTAAAAGATCGTTCGACTACCCAACGTTGAGGCATGACTTCGAATCGATGCAACTCATTGCGCTTCGCAACCTGCACGGTTGCGTTTAAATTACTGGCTACATCGAGCTGAAAATTAACGCCTGAATAACCACCATCAACTAAGACATTTTGAACCCGGCGTAAATGCATGGCATGTAAAGCGATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATCGTCACTCCTTCTCTTAAATCACGTCTCACATCAAATTCCTCCTACACTCTGATGTGATTCATGATACAAAAAATGTAGGAAAACCAACAGTTCTAACCTG # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.07%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 41930-41298 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFBS01000013.1 Lentilactobacillus buchneri strain LA1167 Contig_3_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41929 36 100.0 30 .................................... GAAGTTATCTCTTATGCCGAATCGCTTCTC 41863 36 100.0 30 .................................... TCAAATGTCAAGCGATACGTATGCCACTAA 41797 36 100.0 30 .................................... TGAACTTTTTGCGAACTCTATGCGAACTTG 41731 36 100.0 30 .................................... TGTTCGCCTTTCATCTTTGAAGTCTTGATT 41665 36 97.2 30 .........A.......................... GGTTATTATTATTATGTTTTACGTTATTTT 41599 36 100.0 30 .................................... AGAAGTTGGCGAACTGATCTCGCCAATTGA 41533 36 97.2 30 .........A.......................... GGTTATTATTATTATGTTTTACGTTATTTT 41467 36 100.0 30 .................................... AGAAGTTGGCGAACTGATCTCGCCAATTGA 41401 36 100.0 30 .................................... TAGTTGGTTCGCGGATCCGCTTTATCGACT 41335 36 83.3 0 ...................A.C.CT...G..T.... | GG [41314] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.8 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : TCAAAAACACCGCTACTGCTGAAAACAAAGGTTACGACGCTGGTAAGAAAATCTCGGGGATTAAGCGCCATCTGGCAGTTGATATCAATGGCTTTCCGCAGGCCATTCACATGACGCGAGCGAACGTCTCTGATCGAGACGGGGCCAGTGCAATGATCGCTTTACATGCCATGCATTTACGCCAGGTTCAAAATGTCTTAGTTGATGGTGGTTATTCAGGCGTTAATTTTCAGCTCGATGTAGCCAGTAATTTAAACGCAACCGTGCAGGTTGCGAAGCGCAATGAGTTGCATCGATTCGAAGTCATGCCCCAACGTTGGGTAGTCGAACGATCTTTTAGTTGGCTAGAGAATTGTCGGCGACTTTGGAAAAATTGTGAGCGTCAATTAACCACCAGTCTGCAAATGGTCGTTTTAGCGTTTTTAGCACTATTACTTAAGAGATTTTAGACAGCTTCTAAGGTTAAACCCCCTGCCATTTCCTGTCGCATTTCAGATAGC # Right flank : TATTGGCCTTTTTTGCTTCTGTGCTATAATAGGAATTACAAATGTTCATTAGAACTGTCCAAAAGGAGAACTGGAAATGGCTAAAATCGGTTATGCGCGTGTGAGTTCCAAGGAGCAACATTTAGATCGACAGTTAGCGGCTTTAAAAGACGTTGATAAATTATTTACGGATAAATTAAGTGGAGCTAACACTAATCGGCCAGAACTGCAAAAAATGCTGGCCTATATTCGTGAGGGTGATATTGTCCTGGTCACTGAATTAGATCGCTTAGGCAGAAACAACCAGGATTTGACTAAGATCATGAACTCCATTCAAAATAAGGGGGCCACCCTAGATGTGTTGAATTTACCGTCCATGACAGGAATCGCTGATCCGAACTTACGCCAATTGATGACTAACCTCATCATTGAATTGTATAAGTATCAGGCCGAAAGTGAACGGAAGCGGATTATTGAGCGTCAACAACAGGGGATTTTCCTGGCCAAACAGCAGGGGAAAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : GTTTTAGAAAGATGTTAAATCAATAAGGTTAAACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //