Array 1 6009605-6009816 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023445.1 Actinosynnema pretiosum strain X47 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6009605 29 100.0 32 ............................. GGGCACCCGCGTGCGGGGAAGCGTCGGTTCAA 6009666 29 96.6 32 ............................C GTCGCAGCGGCCTCGATCAGGTCCACGACCTG 6009727 29 100.0 32 ............................. TACTTGTCCCCCAAACCACGCCCGACGTGCAG 6009788 29 93.1 0 .......................A....C | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTCTTCCCCGCACATGCGGGGGTGGTCCG # Left flank : CACCGGGAGACGATGGCGGGCGAGGACGACCCGATCCCGAGCACGAACCGCCCGCCGGAGACCTCGGCGAGCGTGGCGGCCGACATGGCGAGCAGCGCCGGGCCGCGGGTGTAGACGGGGGCGATGGCGGTGCCGAGGCGGGCGGTGGGCGACCACTGGGCGGCGAGGGCGAGCGGGGTGAACGCGTCGGCGCCGGAGGTCTCGGCGGACCAGATGTCGGTGTAGCCGAGGGCGGTGAGCTCGGAGACGAGGGGTTGGTGGTCGAGGATCGGGACACCGGTCAACGGCAGCGTGATACCCCAACGACCCACGGTGGCCTCCCAGAGCTCCAGGTGAGGGCACCGTACCGCAGGGTACCGACTGGTCGGTATGCCGAATGGGGGAATGGGAGGGGTGGCGAGGGGCGGCTTGTGGCGGGCAGGACCGAGCGCTGGATCCGAGACTCCGCTGAACCGAATGAAAACGGTTCCTTGGACGGATAAACTCGCTGGCCAACAAGC # Right flank : CATCCATCCAGCCGTAACCCGCGCACAGGCCCGCCGCTGGACAGCTCCCCCACCCGACGTGTTTAGCGCCCCCGATCAGGGGCACCCAAGAGGCGCGCAGGCCCGCCAGGAGTCCGACCCGACAACCTCAGAGCGCGATCCCGCGTTGCGCCAGCCACCCGACCGGGTCGATCTTCTGGCCGCCGTTGAGCCACACCTCGAAGTGCAGGTGCGGCCCCGTCGACTGGCCCCGGTTGCCCATCGTGGCGATCTGCTGCCCCGCCGACACCCTGGTGCCCGCGTACGCCACGATCGTGTCCACGTGCCCGTACACGGTCACCGTGCCGTCGTCGTGCTGCACGCGCACCCACAGGCCGAAGCCGGACGCGGAGCCCGCCTCGATCACGGTGCCGTCCATCGCCGACAGGATCGGGGTGCCGATCGAGTTCGCGATGTCGATGCCGTAGTGCGTGGTTCCCCAGCGGGCGCCGAAGCCGGACGTGAACGAGCCCTGCGCGGGC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACATGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7637892-7637194 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023445.1 Actinosynnema pretiosum strain X47 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7637891 29 96.6 32 ............................T GGGGTGGATCGGGTGTCCGGGGTCCTGTTCAA 7637830 29 100.0 31 ............................. TGCAGGCCGAGCTGGTCCGCGTGGATGGTGG 7637770 29 100.0 32 ............................. CGGATCGCGCTGATGGAGACCGGCGGGAGGCC 7637709 29 96.6 32 ............................C TCGACGCCCGCCGCGTTCAGGTTCTTCACGCC 7637648 29 100.0 32 ............................. GGCGGGTTGGACCTCGACGAGGCGATGACCGC 7637587 29 96.6 32 ............................C CTGGTGCTCGTGATCACGGGCCCTCCTGGGCT 7637526 29 93.1 32 ............T...............C TACGACCAGGTCACGCGTGGTGTGGACGGGTA 7637465 29 93.1 32 ..........T.................C AGGGCGAACCCGCTGGCCGGGACCGCCAGATC 7637404 29 100.0 32 ............................. TAGACCGCGACCCGCTTCAGGGCGCGCATGAA 7637343 29 89.7 32 .....T......T.T.............. GCGAGTACGTCCGCGTCCGCGTCGACCCGGCC 7637282 29 96.6 32 ........T.................... TAGCCGCGGTCGTTGCGGTAGATCGCGCTATC 7637221 28 89.7 0 ..........T.....T....-....... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.0 32 GTCTTCCCCGCGCACGCGGGGGTGTTCCG # Left flank : AAGCCTCCGTCGGTCTTGACGGGTTGCTTCACACGAAGTGCCCTTGTGGCCGGGTAGTCGACTGCGGCCAGCCAGCGGGCAACCGCGACCTGACGGCGGGCGCCCGCCTCGTCTGCGTCGGCCTGGGCGATGCGGACGATGACTGGGGTGCGAAGCCTGTAGACGGCGTTCGAGCCGATCCGCAGCAACTCGGCGTCGGCGGGGTCGAGGTCGACCTGACGGCAGGCGGTGATCAGAACGCGCTCGGCCTCAGCGGAGGTCAGAGGGCTAGTACTCCTACTCGGCGTCACCGCTTGAACGCTACTCGTGGAGCGGAAAGGCTTCTGCCGGTCGCTCAACAGCGCGCGCGACGTGGTTGTGCTGACCATTGGCTACTCCTCCGCATGGGCTCATACTGGGGCCTCTGACGAGATCGAACCGAGGTCGTCGTGCTTGGCACGACACGTGCTCAACTGAATGAGAAACGTTGTTCTGGTTCAGGGAACCGCAGGTCAAGAAGT # Right flank : ATCAAAGGCATGTGCTCGTCACGTCCAGGGCGCGTCCAGGGGCAAGCTGTCGGCAGCAAAAGTGCTGGTCAGGGCCTGTAAAGGAAACGGACTGTAAATCCGTCGCGAAAGCTACAGAGGTTCGAATCCTCTACCCGCCACAACACGATGAAGACCCCCGTGACCAGCTAGAACAGGTCACGGGGGTCTTCTCTTTCCACGGGGTGCTGCCGCTCGTCCGCGGTTATCCGGGCTCAGGGGTGGAGCGTCGGAGTCGAAGCGCTCCTCGGCGGGGCGCGGGCGCCGGTGCGGCTCTGCTCGGGGCGTGTTCCCCTCGAAGGTGTGGCCGACCAGGCGCGTGTGACTCACCTCATGCGCGACGCCTGCGCCCGGTCGGCCACCGGTCGAGGAGCGCCACTGCTGTGACTGCGACAAATCCCCCTCTTCCGAGTGGAAAGCTCCGCTGTTCCGCGAATGCTCCATGGTCGGTTTGGCGCTGTGGATATTCCGAAACAGTCACT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //