Array 1 3101662-3100320 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024237.1 Mycobacterium heckeshornense strain JCM 15655 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 3101661 36 100.0 38 .................................... TATAGGGGCGGGCACGACCCATCCCCAGACGCCCGCAC 3101587 36 100.0 39 .................................... TCCGGGGCATGCTGATCGAAGTCGCCAACCGATACGCAC 3101512 36 100.0 37 .................................... GTTGCCAACGAGAGCGAGCTGGCGTGCGGACTTATTG 3101439 36 100.0 38 .................................... TCGACTGCGCTCCCACATGCGATCAGACCCCACCGCCC 3101365 36 100.0 36 .................................... GGGACCGGCGCGCCAGGTTCACGCCGTCACTGAAAC 3101293 36 100.0 37 .................................... CTGTTAAACCCATTCCACCAGGGTGTAGCCGTCGCCG 3101220 36 100.0 36 .................................... TTGTTACGCCGCGGCAAAGCCCGCGCTGCCGCGAAC 3101148 36 100.0 35 .................................... CCGCACAGCGGCCAAACAGTCCGAGGACATCAAAC 3101077 36 100.0 35 .................................... GGCGTTGGCTCTGAGTTGTTCGGTAAGGATGGCGG 3101006 35 97.2 36 ...............-.................... CTGTTGTGTTTCACCGGCCCACGCCACCTAACTGGT 3100935 36 100.0 39 .................................... TCGATGAAGGCGGGATCACCGGCTGGCCCACCGATCCCG 3100860 36 100.0 36 .................................... GAGATCCGGCAGGTGGACGAAATGTATGAACCCAAG 3100788 36 100.0 37 .................................... GGCTCGATGCCGTGCGACTTGGCGATTCGCGACGCGC 3100715 36 100.0 36 .................................... GGCGTTGATCACGCTGACCCGGTGATGCCAGCGCGC 3100643 36 100.0 36 .................................... GGCGTTGATCACGCTGACCCGGTGATGCCAGCGCGC 3100571 36 100.0 37 .................................... GCGCCTGAGGCGCGCGTTCATCCGCTTCGGACGCTGA 3100498 36 100.0 35 .................................... GTCGATGGTGTAGATGCGTGCGGTTGCGGCGTTGG 3100427 36 100.0 36 .................................... CGCAGCAGCCGTTGAACCTGTCGCCTTGTCTATCGC 3100355 36 97.2 0 .......................A............ | ========== ====== ====== ====== ==================================== ======================================= ================== 19 36 99.7 37 ATCTCCCAGGTGATTTCGCCTGGGCTCCATTGCGGC # Left flank : TCGATGGTCGACGAGCACACTCGCGAATCGCTGCTGAACATCGTGGAGCGCTCGATTACCGGCGAGCGTCTCGTCGATGAACTCGAGCGGGTGTTCGCCTCCGCCGGTGGACCGCCGCTGGTGCTGCGCATGGACAACGGCCCGGAGATGATTTCGCAAGCGTTGCAACAGTTTTGTGACGGCACAGTCGGATTGTCCTACATTCCACCCGGAGCGCCGTGGGACAACGCCTACATCGAATCGTTCAACAGCAGGCTCAGGAAGGAGTGCCTCAACCGCAACCACTGGACCAACCTGCTGGAGGCCCGAGTAGTCATCGGTGACTTCAAGCACGAACATAATCACCGGCATCGTCACTCCGCGCTGGGCTACCTCACCCCGGCCGAGTACGCTGCCCGATGCAGCCACACCCACACCCCTGTGGCCTGCGAAATCAACTGAATCCAGAACAACAAAACCCGACTCTAGAACCGGGTGGACTCAGTATCGGGGACTCGCCA # Right flank : ACGCGGGAGAGTGAGCGTCTGTGCTTAACGGATTCGCCGTTCGCTGCGGCTAGGGGGAGGACTCTTACCCAAGAGTGGTGACTTACAAGCTTCGGCGGGTTCCGTGCTCCCTCAACATGCTCCCGCCATGTTCGGCATCACTGTTACTCTCCCGGTGTGCCAGCCGAATTCCCTGGTTTCGGCACGCGGTTGCGGCTGCTCGCCTCTGGCCCCAGCAGCTCGCCGTCGGCTGCGACAAGACGGGCCCGGAGCTGGCCGTTGAGGTCGCGTCGCCGCTTCCCGCAAGACCTTCGGGTGGGCATCGACGCTGTCGACCCTGGCAACCGCGGTCGGATCCGGGCAAGGACACGGGCTCCGCGGGCAAGCGTGTCGCGGCGCGGGGCGCCGCATATAGCCGGGTCACCGCGATGTTTACCGATAATGACAAGGGCAACGCCGAGCGGTTTCCGGCACCTGGAGCGCTGATGGATGCCGCGCCATTCGGGCTGGAGGGCTGTTGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCCCAGGTGATTTCGCCTGGGCTCCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 3102986-3105647 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024237.1 Mycobacterium heckeshornense strain JCM 15655 chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3102986 36 100.0 35 .................................... ATCGCGTTGCCGAAACTTTCGGCACCGCCGCTGCT 3103057 36 100.0 36 .................................... GGGCTCTGGACTCGGTGACCTCAACGGCGATATTGA 3103129 36 100.0 38 .................................... CGGTCGAAGAAGTCGACACCGCCGGCGATGTGGTGACG 3103203 36 100.0 36 .................................... ATCTTGGTCGCTGGGGATGAAGAATCATGTGGATGG 3103275 36 100.0 36 .................................... CCTCACGGGATTTTGACTCTTAACTGTAGGAGCAAT 3103347 36 100.0 37 .................................... GGCCATCAGCCGGAATCGAACTGTACAGCGTACCGCT 3103420 36 100.0 36 .................................... TCGATTGTGGTGCCGGAAATCTGTGTGACGGAACCG 3103492 36 100.0 37 .................................... GAGGTACGCCAGACACGGACCCGCGCCATTACCTCGA 3103565 36 100.0 37 .................................... AGGAGCCTAGAATGCCCGCGTACAAGCTGGTGGTGGT 3103638 36 100.0 36 .................................... CTGATCCTGACAGTGCCCGCATCGGAGATTACTCGG 3103710 36 100.0 40 .................................... TCGGCCCCTCAGTGTGGTGTGTCAGCGCACTCATCTGGCT 3103786 36 100.0 36 .................................... GGCCGGATCCCGCTCCGGCCCGGGGATGGTGTTGAG 3103858 36 100.0 36 .................................... CCGCGTCAACGAGCAATGGCGCATCTGTTTCGTGTG 3103930 36 100.0 36 .................................... CGGCACAGAAAAAAGCCTCGGCGGTGTACCAGTCGT 3104002 36 100.0 38 .................................... GGCGACACCATCAGTATGGCATGCCGTGCACTATCACA 3104076 36 100.0 39 .................................... CTGGTTGATGGCGGTATCGAGAGCTTCCAGGCCACGTTC 3104151 36 100.0 37 .................................... GCGCGCTGCGCATCCAGTCGGGGCTGTGGGAGTTCGT 3104224 36 100.0 38 .................................... CGGCACCGGTGTCGGTTGCCGACCCGGCCGGCGGCGGG 3104298 36 100.0 35 .................................... TTGAGAGGCTTGCCAGGGCCGGCGTCGACGGTCTC 3104369 36 100.0 37 .................................... GTTCTGCGCTGGGCGATCACTCAGTTGCAACGGACGT 3104442 36 100.0 38 .................................... CTGCTGCGCCGTCACGTCTATGAGTTCGGCTTTGAGAC 3104516 36 100.0 38 .................................... GCCCACGACCCGAGGTTGACAGCGGGAGTCTCATCTAT 3104590 36 100.0 37 .................................... GCTCGTGCATTCGGGGCTGTACTCGGTGCAGTTGCAG 3104663 36 100.0 35 .................................... CCCGCCAAGAAGTCGCGGACGCACGCGCCGACCTC 3104734 36 100.0 36 .................................... CTGATCGTCGGCCCAGCGCACAGCCCGCTCAAAATT 3104806 36 100.0 38 .................................... CCGGTTGGTGACCCGAAGTCGCGGGAGGTCCTAGACCG 3104880 36 100.0 37 .................................... ACCGAAAATTGGTGCGGCGCCGTTTGTTTTGCGTGGC 3104953 36 100.0 39 .................................... CGCGTCGGTCAGCGTGCCGTCCGTGGGGATCCGGAGCGT 3105028 36 100.0 37 .................................... CTGCGTCTGGATCGCGGCCTGCACTTGCTCCAAGGTG 3105101 36 100.0 37 .................................... ATCAACAAATCGGCTTCTGACTGTACCCGAGGTAGCT 3105174 36 100.0 36 .................................... GAATTCGTGTGCGTGGTAGAGCACGTCGGTGTAGCA 3105246 36 100.0 37 .................................... ACGCGTCATCGTTCAAGCGGGCCGCCGACCAGATCGA 3105319 36 100.0 36 .................................... GAAAACGCCGACGACCGCCTGCACCACCCTGGCTAG 3105391 36 100.0 38 .................................... CCAGTTGCTCCGGCACGCTGACCAAATTCGCGGGATTG 3105465 36 100.0 37 .................................... GCACGGCATCAACGAAGATGTTTTGCTCAGGAAAATC 3105538 36 100.0 38 .................................... CGGTACCGAAAGAGCAGACGCAGCGGCAGAGCATCGCT 3105612 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 37 36 100.0 37 GCCGCAATGGAGCCCAGGCGAAATCACCTGGGAGAT # Left flank : TAGAACGAGCCAGCCCAACCGCCTTGCACGCCAACCGCTCCGACATGCTCAACACCTCTTTGAGCATGTCCACGGCGCGACGCTTGGCGGCCGGGCTCAGAATTTTCCCTTCGCAACCTCCCGCAACGCATCCTTCTCCAACTCCGCCTCGGCCAAAAGCCGCTTCAACCGCGCGTTCTGCTCCCGCAACTCCTTGAGCTGCCTGGCGGCATCGATATCCATCCCGCCATAGGTGCGGCGCCAGTTGTACAGCGTCGCCGCCGACACCTCCAGCTCGGCGGCGATCTCCTCACCGGTCTTGCCCGCCGCGGCCAGCTCGTCCGCGCGGCGCAGCTTGCGCACGATGTCCTCCGCGGAATGCCGCTTCCGACCACCCATGTGTTTCATCATCCCTTCCAGCCCCATCCACGGGGCCACAGGACTCTAAAACAAGGCGGACTCATTCACCGGGAACACCCTAAGATGATCAACGCAAAATCGAGGAACTTGAGAGCCAGATC # Right flank : TAGCAGGAGAGATTTATGGCCTTTGACCTGCAGCGCTCCGAAAGTTTGCGAGCGCTGCCATAGCTGCGCGCAGAGGTTTCAGATATTGAGTTATCAAACAGCCACAATACCATATCTGACCTCGGCGCGAGTCCTGATAGGGCAGTACCTAGCTATTTCAGCGCTCGCAGGATTCCTATATGATTGTCGGGCCTCGCGTCGGCAGCTCGGCCCGTCCGCTAGCTCCTATAAACTCGAAGCATTCAGTTCCCCGAGAACTCGGATCACCGAGGTTTACAAAGACCAAGGAGTCCACAGCGTGGTTCACTGCCTTCCCCAGTTCAAGGCACATAGAATATTTCTCGCCTTCATCAAGATCACAAATAAATACAGAGTATTGGAGCGCGTATCCGTATTTCTTGGCAATCGAATGGACTTCACGCAGGCGGCGGTCGTCGCGGATGTCATAAGCTACGAGGTAGCGGATTCGCTTCATCGGTTACCTGGTGATGATAGGCGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGCCCAGGCGAAATCACCTGGGAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //