Array 1 537272-536023 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEXM01000043.1 Streptomyces alfalfae strain XY25 507, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 537271 29 100.0 32 ............................. TCGGGGAAGACGGCTGCGGGGTCGTCTGCGGG 537210 29 100.0 32 ............................. TCGCCACAAGCCTGCAATTCCAGGTGTTCGCG 537149 29 100.0 32 ............................. CTGGCAGGGTAGCGGCGGATGAGATCGGCGAG 537088 29 100.0 32 ............................. ATCTCGACGGCGCCCTTCCACATGCTGGTGAA 537027 29 100.0 32 ............................. CTTTGCTGACCACCGGCCGCTTTGGCTGCTTC 536966 29 100.0 32 ............................. CCCGTCCGCTCCTGCTCCGACAGCCCACCCCA 536905 29 100.0 32 ............................. GCGAAAGTCATCTCCCTGGAGACCGCCATCCG 536844 29 100.0 32 ............................. ACTCCTTCGGGGGCGAGGCCAGGCTAGGGGAC 536783 29 100.0 32 ............................. CTGTTCGAAGCGGTGCCGGGGCATGGTGAGGA 536722 29 100.0 32 ............................. CGTGAACATCATGATGTGACGACCCACCGCCG 536661 29 100.0 32 ............................. CCCGTACGCCTCGCCTCCTGAACTGCCACCCG 536600 29 100.0 32 ............................. CACGAGGATCATGGCGGCGCGTCATGGCCGCC 536539 29 100.0 32 ............................. ACGTACAAGATCGCTTCTCCGTCCGGCAACGA 536478 29 100.0 32 ............................. AACCGTTCGGCCGCGCCGGTACTGCTCATCAG 536417 29 100.0 32 ............................. ACGGCAGGACGGAGCGAAGCCGTGAGCCGACA 536356 29 100.0 32 ............................. CCCCGGCCGGATCGGCTCGGGGCGTGCGGTGA 536295 29 100.0 32 ............................. CCCGGTCAGGACCGAGGAGAGGACTTCTCCCC 536234 29 100.0 32 ............................. GCGATGCCGAGCCAGAACAAGGCCCTGAAGGA 536173 29 100.0 32 ............................. CTTGTCGCTGACCTTGCGCTGCTTCCTCTCGG 536112 29 96.6 32 ............T................ CCGCCCGGATACGCGATCTGGCCGCAGATCTC 536051 29 79.3 0 .G...T....T.........C.....TT. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCGCTGACGTACGCCGGATCCTCGCGAATTGGCTTGTAGAGGAAAGGGACCTGAGCCTGAAACGGAGGAGTGATCTTGCCGATGTCATGCAACCCGGCCCAGAACGAGACCACTGACCGTGCCTCTGCCACGCTCAGGCCGAGCGCATCCGCAATGGCCGCCTTGGTCTCGTCGCTCAGAACGACATCCCACAGCACCTCGAACACCGCACTGGTATCAAGAAGATGGCACACCACCGGATACGGCTGCGACAGCCCGCTCTCCTTGCCCCACAGCCGAACATCCAGAACACAGTCCCCCGAGGCTCCCGCCTCGTCGAGCTTCAGCATGTCCACAGAGGTAGCACGCCCCACTGACAACGGCCCCAAATAGCCCAAGTTGACCCCGGCTTGAGGGGAGGGTCTTACACTCGCTGCGCGATGACAACGAATCGAGACGCATACACAGCGAGGGTCTGCAAAGAGATGGCAAAGCGGTCGAGTAAGACCAGGTCGCGAAGG # Right flank : TCGGCCCCGGCGCCCCCCAGGGTGGCGCAATGCAGAAACGCGCTAGGTGCTTAGAAGGCACGTGCTCTATCCGCTGAGCTACGGGGGCTGACCTGCGTAAACGCAGCTTCCGGGAGTTGTCCCCCAGGTCGCGGGGGAAATATGGGGAATCGCGGATTCCCGGTGACAGGGGGACGCGAGCGCTTCCTGATCGGGCAGTACGTAAGGTCTCACATTATCTTCACGGCCCCCGAAGGCTCTCACGGAAACAATCCCGCACCCCGTCGGCGTTGGTGATCTCCGAGCCGAGGAGGAGAAGGTGTCGGGCCTGAAGCTGTTCCGCACGGACACGACGAATAGCGGCATGACGGAGGTCATGCCGCGTCTTGCTGAGATCGAGGCCGATGTGCAGGGCCTTGTCGAGGCGCACATGGAGACGCTGCTGGGCGTGCGGTTCCTGGCGAGCGAGTACAGCACGGGGCCCGCCCACGGGGGCCGGATCGACTCGCTCGGGCTGGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 546943-549349 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEXM01000043.1 Streptomyces alfalfae strain XY25 507, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 546943 29 100.0 31 ............................. CCGTCACCGTCCACGCGACAGGGCAGCGCGA 547003 29 100.0 32 ............................. CCTCAACCCCAAGCGCGGCGTCGGCACCCTCA 547064 29 100.0 32 ............................. ACGTCCGCAGACTCGCCCGGCAGTGCACCGTG 547125 29 100.0 32 ............................. CTCGCCGAGGCCGCGCAGGATCACGACCAGGC 547186 29 100.0 32 ............................. CGGCGCAGGCCGACCCCACCAGCTTTGCACTG 547247 29 100.0 32 ............................. CGTCACCGAGATCCCGTCCATCAGGAGCAGGG 547308 29 100.0 32 ............................. ACCTCCGCGGCATCCACGCCGGCATCGACCTC 547369 29 100.0 32 ............................. CCGACACCATCGCTGCCCGCAACGACGTCCTC 547430 29 100.0 32 ............................. TTCGAGGCGGGCCTGGACGACCTCTCGGAATC 547491 29 100.0 32 ............................. TGACCCCGGGCCCGCCCGGCAGGCGAATGCGC 547552 29 100.0 32 ............................. CAGATCTTCGGGTACTTCCCCACGCCCACCCC 547613 29 100.0 32 ............................. CAGAGCGCTCCCTCTGTCTGGCTCTCACCGCC 547674 29 100.0 32 ............................. TCCTGCTCGATGAGCCGCATGCTCACGGCGGC 547735 29 100.0 32 ............................. CCACCGACGCGGGCCGCTCCTGCGGGAGGTGG 547796 29 100.0 32 ............................. GCCGCGGAGAAGAACCCTGCGGTTCGCCTTCA 547857 29 100.0 32 ............................. GCCGCGGAGAAGAACCCTGCGGTTCGCCTTCA 547918 29 100.0 32 ............................. CCGCTCGACCTCTCGCCCGTGGCCGACCGGCT 547979 29 100.0 32 ............................. CCTCACCTCCCGGCCGTAAGGCCAGAAAATAA 548040 29 100.0 32 ............................. ACCGCCAGGCCCCGGGCGACGGCCGCGCGGGC 548101 29 100.0 32 ............................. GAGTACCCGATGACCGACCCCTCCGAAGAGAC 548162 29 100.0 32 ............................. GCGATTCTGGCTCAGGCTGATGCTGACCAGTG 548223 29 96.6 32 ..................T.......... TCCGGGTTCAGGATCAGGTTCCGGTCGGTGCT 548284 29 100.0 32 ............................. GTCTTCATCTTCGCCAGCCGCTGCTGAATCTT 548345 29 100.0 32 ............................. ATGGACAACGTCCTCTTCCTGCCCCGCCCCGT 548406 29 100.0 32 ............................. TCGGTCCGGCCGGTGAGAGGGCGCGGGCGAGC 548467 29 100.0 32 ............................. ATACACAACTAAGGGTCTTTCTCGTCCTCACT 548528 29 100.0 32 ............................. GTCTCGTAGAACGTCTCGGCGATCAGCGGGCC 548589 29 100.0 32 ............................. CGGCGTCCGCCGCGTCCGCCGGTCTCGGGGAC 548650 29 100.0 32 ............................. CTGCTCTGGCACACGGTGCTCAGCTCGATGTC 548711 29 100.0 32 ............................. AACGCGTCGGGCTGCTGGTAGCCGGGCCGGGT 548772 29 100.0 32 ............................. TGGAGGACGGCCTGCTCGACCAGGAAGCGGTC 548833 29 100.0 32 ............................. GTCGACACGGACGGCTCGGAGCTGGCCGAGCC 548894 29 100.0 32 ............................. TCCTGTTCGGCTGCTACCAGCCGCGCGACCTC 548955 29 96.6 32 .C........................... CAGGTGGCCGCGCCGGACCCGGTCGCTGTTCC 549016 29 100.0 32 ............................. GTGTAACTTCCGCGCGGCCCGAACCCCCAGCC 549077 29 100.0 32 ............................. GTGAACCCCGCCTTCATGCCCGACGATCGCCA 549138 29 100.0 32 ............................. TGCTCTCCGGGGCCGGGCAGGACCGTCTCGGC 549199 29 100.0 32 ............................. AGGATGCCGAGGTCCACGCCGATCACCTCAGC 549260 29 100.0 32 ............................. CGGAGCGGCCCTCTGGCGTGTCCAGTGGTGGG 549321 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.7 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCCCCGCATAGTCACCGACATCCAGCAACTCCTCGACCCCGACCGCACCTACGGGCCCCCCGACCCCGCGGAACAATTGGTCGACCTCTGGGACCCCGTAGCCGGCTCCGTGCCCGCCGGCATCAACCACGGAAGCCAGCCGTAACCCTGCCCACGGAAGGACACCGGCCATATCCTCGATGATCGTCATCTCAGCCACCGCCGTACCGGACCATCTCCGCGGCGCCCTCACCCGCTGGCTGCTCGAAGTCACACCCGAGCTGTACGTCGGCACCGTCTCCGCCAAGGTCCGTGACGAACTCTGGTCAGCGGTCACCGCCTGCACCGACGACGGCATGGCAGTGCTCGCCCACCCCGCCGACAACGAACAAGGCTTCCAACTGCGAACCGCAGGCGCCCGCCGCCGCGAACCGATCGACTTCGACGGCCTCACTCTGATTGCCTTCCAGCGAGAAGGTCAAGAAATGGCAAACCCCGTCTAACGCGCCAGGTCACGAAGG # Right flank : GTCGTAGGTCATGAAGGCAGCGTGGCTCTCGGGGCGGGCGCGGTCTGGGCCAACGGTCCATACGGGGTGTGACCTAGGTCACTCGCTAGTGTTTCCAGATGTCGGGCTCGCCGCCCCGCCAGTCGATGAGCGCGGACCGGACGAGATCACCACGGGCACGCTCGAAGCCATACCGCCAGCCTGATCGCACGCACGAGAAGGCGCACGCTGGGCTACTCCAGCACGCCGAGGTCGCGTCTAGAGCACGGCCAAGATCAACGAAAGAACCCCCGGCCTACAGGAGGCCGGGGGCTGTAGATGGGTTCCGTTTCAGACAACGCGCTTGAAGCGGAGGCAACGGAGGAGCGGGAGGAGCGCCAGACCTGTCATCTCGGGCGGGACCTGCGGAAGCAGATAGATCACGATGCCGGCGATAACGGCGTTGTACGCGTCCTGCCACCCGGGGCGGCGGTATTGGAGTCTCACGGGCTTCCAACGCTGTGATTGCATGGTGTTGTCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 550205-550534 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEXM01000043.1 Streptomyces alfalfae strain XY25 507, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 550205 29 100.0 32 ............................. GAGTAGGTGTCCGTGAGCGTGGGATGTTCGGC 550266 29 100.0 32 ............................. GCGGACCGCGATGCCTGACCAGATGACCCGTC 550327 29 100.0 31 ............................. GCCAGCCACCCCACCTACGGCAAGGCGACAC 550387 27 86.2 32 ................--..A..A..... ACGATGAAGGGCGCCACCGGCCCCTTCGCCGA 550446 29 96.6 32 ..........T.................. TAGTTGACGGCGACCAGGAAGGGGATGTCCTC 550507 28 82.8 0 ..........A.T....A.....-....A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCAGACCTGTCATCTCGGGCGGGACCTGCGGAAGCAGATAGATCACGATGCCGGCGATAACGGCGTTGTACGCGTCCTGCCACCCGGGGCGGCGGTATTGGAGTCTCACGGGCTTCCAACGCTGTGATTGCATGGTGTTGTCCTTCGTGCGATTGCTCTCGTGACGTGCGGACACTGCGGGGATCGCCCTGGCAGGGGCGGTCCCCGTCCGCGTTGCCGATGACGGTATGTGGTGGTTGCAGCGGTTGAGGTGGCCAAGGGCGAGCGTCGGCCATGGGGTCAACTCGCCCTGCCACCTGGGGCGTTGGTTGACTTACCCTAATCTTGAGGTAAGGCTATAGAGCGCTGACCTGCGGTTTCCCTCGACCCATCCACGCAGTCCACGTTAAAAGATCTACGATTGACTTAAAGTCGCCCTCTAGACCGAAGCGCCCACCTGCGCGCCGCAGACTGCGCGCGGCCTGCAAGCCGCACAACGCAGAGGCGCAACCAGTAGCCCG # Right flank : ACGGTCGTTTCGTTCCAACCTCGCAATTGATTGAGCTCATGGTCCGAGATCTCACCGGCGAAGCCACCATGAAGTAGTGCGAAACCTGGGCCAGGACCAAACACGAATCAACGGACTGAACGCTCAATTAGAAGCGCTAGGTCTGTCGCTCCTCACTCATCGACCCATCCGTGGGTAAATCGGACTAGCGATCTCAGTGTCACTGCATCGGGCACTCCCTTCGCTTTACGATGCCCTCAGTCGCGCTTCCTTCTGCTTAAATCTTTCTCCAGATACTATTGATCCTCGTGTCAGCCAAGCTGACGCCCTGGAGGGCGAGTGCAAGACGAAGAACGAGACTGGGCATTTTGGAGTCTCCTCGTCGCCATGCTCCAATTAGTGCTAGAAGTTATACGGTAGCTACCAACGAGACTCGCACGAGTCACCACCCCTCCCTTGCCATCGATTCCTTTCTCCGCATAAGCGGAGGTGAGCCGATTTAGGCAGACGGGAGATCTGGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //