Array 1 16852-17306 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058322.1 Micromonospora carbonacea strain aurantiaca chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16852 28 100.0 33 ............................ CTGGAAGATCACCGTGCCGGTCCCGTCGACGAG 16913 28 100.0 33 ............................ CCGCTCCGAGCCGCCGTCCAACGGCGAGCTGTC 16974 28 100.0 33 ............................ GCCATTCGATCGATGGTCGCCGCGTGGGCTGGC 17035 28 100.0 33 ............................ CTCCCGAAGCGGACCGGCAAGGCACAGAAGGTC 17096 28 96.4 33 ....................C....... CTACATGCTGGAGCGCAACGTCAGTGCCACCTG 17157 28 100.0 33 ............................ GGAGCAGCCTGTGTCCGCCACCGCCCGGCCCAG 17218 28 100.0 33 ............................ CAGATCGCGCGCCAGCTCGTCGAGCATCCCGTC 17279 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 33 CTGTTCCCCGCGCATGCGGGGGTGATCC # Left flank : TCACCGCGGACCGGTCGACGGTCGGCCTGGGCGAGTTGCCGAACGGAACACCGTTGGCCGCTCCCGGGCCGGTGTGGGGAAGAGGTGAAGGTGGGAGAGGGGGCGGCGGGTGAGGGGCGGGGTTGGGGTTAAGGCTGCCTCCGGCGGGGGCCCAACGACTCCGGGATGGAGTTGCCGAACGGTTGCGGTCGTGGGTGGTTGGGGTGGGATGCCATCCCGTCCACCGCCGACCCAGGCAGAGCCGAGCAGACCAGGGCCAGGGCGACAAGGTCGTTCGTCCGGTAGGGCGCTCCACCTTGTCACCCTGGCCCTGGCCCGCTCCACGGTGTGTGGGTCGGCGGCGGACGGGATGGCAACAGCGGGGGCGCGGTGCGCGCCAAGCGCGGCGAGTCGGCGGTACCTTGTCACCAGCAACCAGGGCGGCACGGGCGGAGAGGATCTTGGTCGGGCAAGTGAATGAAATCGGCGCTGTTGATCTTTAGCGGTCCAGGTCAGGAAGT # Right flank : CGGGCAGCGCAGAGGCAGCGAAACGGTTGCCAGTCGTTGATGGTGCCCGGGGCCGGCCGTGCACCATGGCCACCTGAGCAGCACCAGAAGGCAACGGCTTGCAGTCGATGGTGCGCCACATCGGCGTTCGGGACGAAGAGTTCAGCCCGCTCCGGGGCCAGGTGCAGGCGGCTAGGCGGTTCCTATAGATGCTGATGACGTGGCCACCAGCGCCTTCAGCTGTTCAACCGTCAGCCAGGGGCTGCCGCGGTGGGCCATCCGGTGGCAGTTCGAGCAGATCAAGGCGAGGTCGCTGAGCCGGGTGTGGGTCTCGCCGGAGACGTGCAGTGGAGTCCGGTGGTGGCACTCGATGTAGTCGCGTCCTCTGTCGCCGTAGACGCGTTGGAAGTCGAATCCGCATACCTCGCAGGCGATGGCGACGCCGCGGCGTTTGGCGTCGGCCAGCTTCTGGCGTCGGAGCTTCGGGTTGCGCTCTCGGCGAAGGTGAGCCCGCAAGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 546005-544514 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058322.1 Micromonospora carbonacea strain aurantiaca chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 546004 28 100.0 33 ............................ CGGGACACCATCGTGCAGATGCTGATCGACGGT 545943 28 100.0 33 ............................ CGAGCGGTACACGGCGCAGCGGCCCACCACGAA 545882 28 100.0 33 ............................ GGTGCTTGGCGGGTGTCGCCCACCAGGCGATCG 545821 28 100.0 33 ............................ GGCCGCCCAGGAGCTGCTGGAGGCACAGCTCCG 545760 28 100.0 33 ............................ CGGGGTTGCCCCACATCCAGCGAGACAGCATGC 545699 28 100.0 33 ............................ ACATCACGAACCTCAGCGACCTGTACGCGGTCC 545638 28 100.0 33 ............................ CGATCCGGCGGCGGTGGTTGCGGAGGTCGAGCA 545577 28 100.0 33 ............................ TCGTGGGTGCGCGCCCTGGTGTCGTTGGAACAG 545516 28 100.0 33 ............................ CGCCAGTTCGACTACGGCGAACATAGCGACCCG 545455 28 100.0 33 ............................ CTCACACCGTCCACCGGACCGGATACCGATGAC 545394 28 100.0 33 ............................ CAGGAGTGCGGCAGCGATGAACAGGGCTCCGGT 545333 28 100.0 33 ............................ CAGCCGCAGGTCGATGCTGTCGGCGTGGACGGC 545272 28 100.0 33 ............................ CGCGCGGAAGGTCGCGAAGCCGGGTCAGAAGTA 545211 28 100.0 33 ............................ CTGCCCGCAGTGCGGCCGGATCGCACCCGGCCG 545150 28 100.0 33 ............................ CGGCAGCGGCTGGGACCTGTACGTGTCCGACCC 545089 28 100.0 33 ............................ CGCCCCGCCGTCGTCGACGGCGGTGATGCGGTA 545028 28 100.0 33 ............................ CGTTCGTACTAAGAGGTAGTGCGTAGAGCTGTC 544967 28 100.0 33 ............................ GGCTGACGAGTCGCCGCGAGGTGCTACCAGCAT 544906 28 100.0 33 ............................ CAGGGCGCTGCGGGTCTGGGTGTAGCGGGTGGC 544845 28 100.0 33 ............................ CATGTCAGCGTCCTTGTAGACGCCCACCTTCGG 544784 28 100.0 33 ............................ CGTCGTGCATCTGCCAGCCCAACCCCACGCCCA 544723 28 100.0 33 ............................ GTAGCGCTGCCGCTGCCGGGCCTTGTCGCCCTC 544662 28 96.4 33 ............T............... GCCGCGAGGACGAGCCCCATGGCCGCCGCAGAC 544601 27 96.4 33 .................-.......... CGCTCTCGGGCCCGCCGGTCGGGGTCGCAGTAG 544541 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.7 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : AGCACCGGCGGCCGACCGACCTGCCCGAAGCCCAACGGCACGTCCGCTGGCGGGAACCACAGATCGCACTGCGCCAGCTCACCGGGCAGATACTCCGTCCGCTGCGCCGGGTCGGGTCGGCGGAACAACGGCCGCAGCTGCTGCACCCGATCAGCGAACACCGTCTTGCCGCGGGTCCACCCGACCCGTTCCATGATCACCGTCGTCGGCATGTCCGGGAACTCGGCCAACAACGCCCTGATCTGCGGCTCGACCGCGTCCACGATCGAACCCTTCGCCGCCCGCTGATAGCGAGGCGGCTCATGACTGGCCAAGGCCTTGCGCACCGTGTTCCGCGAGACACCCAGCCGCCGACAGATAGCCTTGATCGCCATCCGCTCCGCCCGGTGCAACCGACGGATCTCCGCCCAGTCCTCCACGCTCAGCACCTCCCGATGCTTCCGAAAGGGGTCAAGATTCAGCCGGAACCACGGGGTCAGTTTTCAGGCGGAGCCGACATA # Right flank : CAGTTAAACCCCAGGCTGAGGCCCTCGACGGCAGCGAGGACCTCAGACTTCAGCGACGAAGACGCCTCGCCCCGGACGCCCGACCAGCACGCCGCGCTTCCGCAGCGTCGCCCAGGCTCGGTTGATGGTGGAATGCGAGACGTCGTACTCGGCCGCCAGGGCACGCCCTGACGGCAGCTGCGAGCCGGGCGGAAACTCGCCCTCCTCGATGCGCCTCATCAGGTCGTCGAGCAGCTCGTCCATCGTGGGCGGGATAGGCACGTGGGGCCCCTTGCAGTCGGTTGGCCCCGCCAGTATCGATCCGTAGATCCGCCACAGGCAAAACACCTAGCCCAGCCGGCATAGATGACAATAATGGCTCAGTGGTCCAGAGGATTACTTGACATAGGTGAGATCACTCCGTAGCGTCGCTGACAGTGACGCGCTCCGTGCGGTCGGTTGGCGCTCTCCGTGGGTTGCTCGTCACCACAGCGCATTCCCCCAGCCCGGGGTGGCCGGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 550723-549780 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058322.1 Micromonospora carbonacea strain aurantiaca chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 550722 28 100.0 33 ............................ GAACGCGTTCTTCTCGCCCCCGGAGAGGAAGTC 550661 28 100.0 33 ............................ GGTCGAGGCGGCAGCCGGGATCCCGCCGGAGCC 550600 28 100.0 33 ............................ CGCCTCCAGGGCGTCCGGCTCGGCGCCGAGGAC 550539 28 100.0 33 ............................ CAGGTACCGGTGGTCACGGCGCTGCGCCGTGGT 550478 28 100.0 33 ............................ CACCCGGCCGGGCAGGTCCGGGTCGTGCACCGA 550417 28 100.0 33 ............................ CGCGGCCGGCGCGAACATCGAGCGCGGTTTCTT 550356 28 100.0 33 ............................ GGTGTTCGCCCGCTCGGCCGCCGAGGTGAAGCC 550295 28 100.0 33 ............................ CTTTGGAACAGGTCCGCCCCCGCAACCTCGGCG 550234 28 100.0 33 ............................ CGCACCCGCCGGCACCGACGGCTCCACCGGCGA 550173 28 100.0 33 ............................ CGGTCACGCTGAACGCGGGGAATCAGCCCCTCG 550112 28 100.0 33 ............................ TGCTAGCCGCGTGTCTCGCGTCTCTCAGCATTC 550051 28 100.0 33 ............................ CGGGTGCCGACGCGCCGCAGCGACCGCGAGCAG 549990 28 100.0 33 ............................ GAGCAACATCGCGAACATCCTGAAGCGGCTCAC 549929 28 100.0 33 ............................ GCAGCCATCTGGGCGCACAACCGGGCCACCAAC 549868 28 100.0 33 ............................ GAACCCGCGGTCGCTGGGGGTGATGACGAACAG 549807 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : AGGCAACGGCGCAGCGATCCGCCGCCGGACGCTCTCCGGCAGCCACATGTCCCACAGCAGGCCAGCGACATCGGCGCTGTCCACGAGGTGACGATGCAGCGGAAGCCAGAAACCCCTCTCGCGGTTCGTCTTACCCCAGACAAGACGGGCACTCTCGCTGAGACCAGGTTGGTCGGGCACGGAAGGGATGAAAACAGAGGGGTACGACACCTGACGACCAACTCCCAGGGACGACTTTCAGGCCGACCGCGCGGCCGCCTTCAACATCGAGAACGACGCTCATGTACGCCCGGACGCGGCCTGGTCGAAGACCGAGCGAGATTCATCTGACCGTCGGAACCCCTCCCCGTCGCACACCCCCGCGGGGACTCCATCGGTACGCTGAGTCGGCTGCACTCACACCACCCCCGTCGGCATACTTGAGCGCAAAGACGATGATCTTGAGAGGCAAAGTGAAGGAAAACGAGAAAGTTGATCTATAACGCTGCTGGTCAGGAAGT # Right flank : CCGTTACCTTTTTGATCGTCCCCAGTCGGGGACCCTCGGTCGCCCGGCCCGGTATGACTTCCTGCCCCTGTCGTTTCGATGATCCGGGGGGTGTTGTCGCCGGGTCGGGTGGCGTCGGCGGACCGCTGATAGGGACACGGCCGCCCCGTGTTGGGGTAGGTCTCTTCGTAACGTGGCTGCCGGCAGTCCGACGCCCAGACTGCGGCCGGGGCCACGAGTGATGCGTGGAGGCGGGTGTGGTGCACGACGGATACGGTGTCTACCTCGGCTTGGACGTCGGCAAGGGTGATCACCACGCGGTCGGGTTGACCCCGGACGGCAGACGGTTGCACGACGCGCCGCTACCGAACACCGAGGCCCGGCTGCGGCAACTGTTCGACAAACTCTCCCGTCACGGCCAGGTCCTGGTCGTGGTCGACCAACCCGCCTCGATCGGTGCCCTGCCGGTGGCGGTGGCTCGGGCGTGCGGGCATCAGGTGGCCTACCTGCCCGGGCTGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 4 560522-560975 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058322.1 Micromonospora carbonacea strain aurantiaca chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 560522 28 100.0 33 ............................ CAGGCCGGACGCCTGCCGCAGGTTGACCAGCGC 560583 28 100.0 33 ............................ CGTCATCACCAGCGCAGGCCCCGAGGCCACGCA 560644 28 100.0 33 ............................ CACGGTGCGATCCTTGGCGATCAGGGCGACCCC 560705 28 100.0 33 ............................ CCGGCGCCGGACCTGCCGTTGATCAGTGAGTAC 560766 28 100.0 33 ............................ GAACATGAACCCGAACGGCAGCATGAGCAGCGC 560827 28 100.0 34 ............................ CGAGGTTCTGCGGGAGGCGACCCAGTCGTACCTG 560889 28 96.4 33 ..........T................. GTAGACCGGGCTCAGCATCGGGTCGTCCTAGAA 560950 26 89.3 0 ........--..T............... | ========== ====== ====== ====== ============================ ================================== ================== 8 28 98.2 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TGTGGGATGAGGGAGGCTACGAACTCGCCGGCGGCCGGAACTACTCCGGGGACGTGGACTTCTGATGACGGTCATCATCCTCACCGCCTGCCCCGAAGGGCTGCGTGGGCACCTGACGCAGTGGCTGCTGGAGATCTCCGCCGGGGTGTACGTGGGACACGTGAACAGCCGGATCCGACAGCGGCTCTGGGCGAAGGTCGTCGAGATGGCCGGGCCAGGCCGGGCACTGCTCGTCTACCAGCGGCCAGGCGAGCAACGACTGACCTTCGAGGTACACGACCATCACTGGGAGCCGGTGGACTTCGACGGGATCTCGCTCATGCGTCGGCCTACGGATCGGAGTTCGTACAACCCAGCAGTGGGGCGGGGATGGAGCAAGGCGTCCAAGCGTCGGAAGTTCGGGCGGAGGGCCCCGGACGGGGCCAGTGGATTGTCGACACCCTCCGGGCAAAGTGAAGGAAAAGGTGGTAGTTGATCTTTAGCGCCCCAGCTCAGGAAGG # Right flank : CCCAGTACGTCATTCGGAAGCTCAGGGCCGCCTGATCATTCCGCGCTCGGCGGCGGGTGCGTGGTCGCCGCATGCCGTCGTCGTAGCGTCGACTCGTGGCGGTACGGTGACCTTCCGTGGCCCGAGCGGGCCGCGCTGACAGGGAGGTGCGCGATGGGAGCGCCGGACGTGGTGGCCCAGCCGGTCGCCGGGCTCGACGAGGTCGACCGGCCGCTGTTCACCTTCTGCGACGACGCGACCGGCGACCGGGTCGCCCTGAGCGCCGGCGACCTGGGCGGCTGGGCGGCGCGCACCGCCGGGCTGTTGCGCGACGGCTGCGGGCTGGCCCCGGGCAGCCGGGTCGCGGTGCTGCTGCCGCCGCACTGGCGTACCGCCGCCGTGTTGCTGGGTGCCTGGTCGGTGGGTCTGGCGGTGTCGTTCCGGCCCCGGGCCACCGCCGGGCTGCCGGTCCTGGAGCCGGGCGGCGACCGGCCGTACGACGCGGTGTGTGTCACCCCGGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 5 1214377-1213372 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058322.1 Micromonospora carbonacea strain aurantiaca chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1214376 28 100.0 34 ............................ CGGCGTGTTGACCGAGAAGATCAAGGCGGGCGTC 1214314 28 100.0 33 ............................ GGAGGCGAACCGGCGATGACCATCCCCGACCTC 1214253 28 100.0 33 ............................ CGCGACAAGCGAATCAGCGGGCGCGGACGGGCC 1214192 28 100.0 33 ............................ CGCCACCACCACCGAGCGGGCCCTCGTCGCCAA 1214131 28 100.0 33 ............................ CCGAGGCCGCCTCTTCTTCCTCCGGGTGCCCGT 1214070 28 100.0 33 ............................ CGTACGAGTCGTACTGCGCGGCGGGCCAGGGCT 1214009 28 100.0 33 ............................ CGATCGCCTCAGCGGCCGGACGGTGCGTGCTGC 1213948 28 100.0 33 ............................ CAGGATGCTTTTTCCCGAGCCGGTGCCGCACGA 1213887 28 100.0 33 ............................ GATCGGCCACACCGACGGCCGGTTCACCGACCC 1213826 28 100.0 33 ............................ CGATGGCGACCGGCTGGGCGCTGAACGCGAACG 1213765 28 100.0 33 ............................ CCGATCGCGTGATGATCTCGATCGTGCCTGGCG 1213704 28 100.0 33 ............................ GATCCACCGCCGGCTTCTGCTGGGCGCGGTCGG 1213643 28 96.4 33 ..........................T. CGCGCGCCGGCGAGCCGGGTCGAACACGGCGCC 1213582 28 96.4 33 ...........C................ TGAGCGTGAATCGGCGCTCCGCCTCCGTGCGCA 1213521 28 100.0 33 ............................ CTCATGTGCACGTCGTACGCGGAGGGGGTGTAG 1213460 28 96.4 33 ...................C........ CACACCGCCCGCCACCGTCTTGTTGGCCAGGGC 1213399 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 17 28 99.4 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GACCGGGGCCGGACGCGGGCGGTGCTGTGGGTGCTGGCGGGCAACGCGCCGGCCCGGCGCTTCTACGAGCGGGGCGGCTGGCAGCCCACCGGCGAGCGCCGGGAGGAGCTGATCGGCACCGCCCTGACCCCCCAGCTCCGCTACGCCCGCGCTGTGTAAGGAAGGGCCCCCTGTTAACGCATACGGTAGAGAAGGGTTCCCCTCTCACCCTCGCCCCGAGCGCGCCGCCAGGCGGCCAAGCTAGAGGCGTACGTGGTGACGGCGAGCGGGCCGCCGACGGACCCCGGTGCGCCGGTCCAGCCGCTCCTTCCGTATCCGGAGCGCAGTACCTTGGGGTTCATCGGATCGCCGATCGCTTCCTTCAGTTCAGCGCCTGCCGACATTAGGCTGTGCTCGCCCTCGCGGAACGTGCCGGAGGAAGGGGCATTTGGCAGATGATCTTGCGCAGCAAAGTGAAGGAAAACGAGGAAGTTGATCTTTAGAACCGCAGGTCAAGAAGT # Right flank : GGCGCAGAGGCCGGCGCAGGTCTTCGACCTGGACTGCTTCGCACGTGGACCGATTCCAAACGCGGCGGTCCGCCGAACCCGTCCAGGCCGCACCGGACCAGCCCGGACGGCCGGGAGCCGCACGGCCGCGCAGGCGACGAGCCGTACTCCCAGACGACGAAGGTCCCCAGCCTCACACGCTGGGGACCTTCGGCGGCGTTCGGGGGAATCAGCCCAGCGGGCTGCTCTTCTTCGCCAGGTCGACGAAAGACTGCCAGGTGCCGGGGGTGAAGCGGAGGGTGCCGCCGTCACGGTCCTTGGTGTCGCGCACCAGCACGACGCCCGGCATGTTGTCCGCGACCTCGACGCAGGACCCGCCGTTGCCGCCGGACCTGGTCGACTTCCGCCACTGCGGGGTCGTCATCGACTCCATGACTTGGCCACCTCCTTGATCAGTTCGATGGACTGCCGGCGGGAAAGCGCCTCGTTCCGCACGATTTCCCACGTCTTCGCGAGCCTAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 6 1959271-1959544 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058322.1 Micromonospora carbonacea strain aurantiaca chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1959271 29 100.0 32 ............................. GCCAGCCGCACCCGGACCAGCAGGCTGTCGCC 1959332 29 96.6 32 ............................T GCGGGGTCGCGCAGCTTTGACCCGTCGCGGAC 1959393 29 96.6 32 .....................A....... GGCCATCAGCGCCGGCAGCGCATCGCCGCCGC 1959454 29 100.0 32 ............................. GACGTCACGATGGCGGTTGGCGGGGCCGGGCC 1959515 29 93.1 0 ...T.....................G... | A [1959537] ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : CTTGATCCCTCCGCGGGCGGGCCCCGGCGAACCCCTGACGTGCTTCCGGTCCGTACGGTCCCGTTCGACGGTGGGCTTGGCTGCCGGGGGACCAAGATCGTGCTCGATCCGGGAAAGTGTCCCCTCGTTGCGAGCGGGAAGCCACTCTTTCATGGATCGAGCACGACCTTGCACGCCTGCCCCGTCAACGGGCGACTCCGGGAAACCGCCCGACGCCGGAACTGGGAGATCTTGGAAGCTGACGGCCCCTCTAGGGGCCCAAATCTTCCAAGATCTATGCGATCCTCGCCTGTCGGCAGCGACGCGATCCGTCTCCGGTGGCGGCGATCCTGCTACCCGCTGTCTGAGGGCGGGTGCCGTGCTTCTTCCAGACATCGACGTGCCCATTAGGCTGTCCTCGCTCTACTTGCCTCGAAAGTCGACTCTCACAGGAGACGATCTTGCCGCGCAAAGTGAAGGAAAACGAATTAGTTGATCTTTAGCGCCCCAGGTCAGGAAGT # Right flank : CTCCACCGGCCTTCCTGGCTGGTCTAAGCCACTTGTTCCCGCCTGGATGCTGGATGACCTCGACTCCCTCTCCGATTACCTTTGCCTGAGCGGGGAGCAGGACGTCCCGATCGGCATAGATGGTCATGCCGGGTATCACCCCGCGTGCGCGGGGGGCAGGACCTGCGCACCTACGAGTGCGACCCGAACGGCGGATCACCTCGCCTCCGCGTGCGCGGGGAGCAGGATGCGTACGGACCGTCAGTGGGGGTCTTGTTCGGATCACCCCCGCGTGCGCGGGGAGCAGGTCTCGTCCTGCAGGTGCCGCAGGCCGGACTCGGGGATCACCCCCGCGTGCGCGGGGAGCAGGTCCAGTTCCCGGCCGGCCGGCCCGGTCCCGGCCGGATCACCCCCGCGTGCGCGGGGAGCAGGCTTGCTGACCTGGGGCGCTAAAGATCAACCCTCGTTTTTCTTTGGTTTGCCTCGCAAGATCCTCTCCTGGCTACGACTGTTCGGCGTCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 2463628-2465429 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058322.1 Micromonospora carbonacea strain aurantiaca chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2463628 28 100.0 33 ............................ CGGGTCCGGGCCCGCCGGCTGCCGGCCGTCGAT 2463689 28 100.0 33 ............................ GTCACCGAAGCCCCGGCGGGTAGCAATGCGAGC 2463750 28 96.4 33 ...............C............ TTCGAGGGCAACCAATGCGCTGACCGCGCGTCC 2463811 28 100.0 33 ............................ CGCCTGGTACCCGTCACGCAAGACGCACCGGCC 2463872 28 100.0 33 ............................ CGGCAAGGCCGACGTCGCCGGCCGCATCCGATT 2463933 28 100.0 34 ............................ ACTCCAGCCCCGGATCACTCGCGAGGGCTTTTGT 2463995 28 100.0 33 ............................ GCGGGTCGCGATGGTGCCGACGTCGCCGGCGAT 2464056 28 100.0 33 ............................ CGACTGGACCGTGAGCCGGCCGGGCGGCTCGGG 2464117 28 100.0 33 ............................ TCCGTACGGGGGCTTGCCACTCACATACCCGCC 2464178 28 100.0 33 ............................ GTTGATGTTCGGGCGACCGGCGGCGCGGTCGCC 2464239 28 100.0 33 ............................ GGTCGGCATCAAGCTCCCGCGGGTCGCCCGGGA 2464300 28 100.0 33 ............................ CAACGGTTATCACCTGAGACGCGCGCCTCACAC 2464361 28 100.0 33 ............................ CTGAAGCGCGAGAAGCTCGCCGACGGCGACAGC 2464422 28 100.0 33 ............................ GGGGAAGGCGGACACTAAAACCGCTGAGGGTGC 2464483 28 100.0 33 ............................ GGGGCGATCTAGCGATTCGGCTAAGGTAACCGG 2464544 28 100.0 33 ............................ CTGGGCGTCGGCCCGGGCGTCGGCGTGCGGGAA 2464605 28 100.0 33 ............................ CCAGGACACGGCGTCCACGTCCGGCTGCGCCCG 2464666 28 100.0 33 ............................ CTCCGCCTCCGTGAGCCCCTGGGCGCGGGCGAG 2464727 28 100.0 34 ............................ CGGTGCCCGTCCCCCGGCACCCTTCCGGCCGCAG 2464789 28 100.0 33 ............................ GGTGTGGCCGGGCCCCGCGTGCTGGGTGGGGTC 2464850 28 100.0 33 ............................ CTGGGCGAGGTCGACCCAGTCGTAGAGGAGGGT 2464911 28 100.0 33 ............................ CGGGGAGTCGCGCCGCGCCGCCCACCGGGACAC 2464972 28 100.0 33 ............................ CGTCGTCAGGCCGGCGGGTGTGCGTTGCTCGAC 2465033 28 96.4 33 ..................T......... GGGCCTCGCCCCGTGGTCGTCGGGGATGCTCGC 2465094 27 96.4 33 .................-.......... GTGTTTCGCGCGGCCACCGTCGACCAGCCGGTC 2465154 28 100.0 33 ............................ CGTGCGGGCCTCCTTGAGGGTGGCGGTGCGCGC 2465215 28 96.4 33 ...............A............ GGGGAAGTGTGCCGTGTCCACGGTCCACGCGCC 2465276 28 89.3 34 ............TCG............. CGGAGCGGCAGAGGAGCAGCCAGCACTGCGGGTC 2465338 27 82.1 33 ...........TTG.......A..-... GAGCTGGGCGGTGCTGAACTCCATCCGTTCCGG 2465398 28 89.3 0 .....T..G..................T | AGA,C [2465419,2465426] ========== ====== ====== ====== ============================ ================================== ================== 30 28 98.2 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CCTGCTCAAGCCGCCGTTCCTTGATCACGATCCCGGCTGGCCGGCGCAGCCCATCCTGATCCGCATGAGGCGACGCGCGGCAGGCGCGCCGTGACGCCGACGCTCGACGGGGCCAGCGACGTCGAGCTGTCCGGCTTCATCCACCGGGAGCTGGGCGGCCCCGACGGCAACCTGGGTGGAGCCCTTTGACCGGCTCGACGGCCTGGTGAGCCGCCGTTGGCGGCCGGAGTGGGAGAAGACGGGCAGACCCTGGGCCGCCCCTTGCCGGGTGGCCTGGGTTAGGGCTGCCTCCGGCGGGGGCAACGACTCCAGGATGGAGTTGCCGAACGGTGGCGGTCATGGGTGGTGGGGATGGCAGGAGCGGGGGCGCGGTGCGTTGAGCGCGGAGCGTCAGGGGTACTTTGCTTATCGGCAACCGGGCGGTACGGGCGGGGAGGATCTTGAGCGGGCAAGTGAATGAAATCGGCGTTGTTGATCTTTAGCGGCCCAGGTCAGGAAGT # Right flank : TTCATGGGCCGGCGATGGCGGCGGTGAACTGCGGGGTTTGCTCCCGAAGGGGGTGGTCCTTCATTTGAGCCTTGGCCCGTCCGGCTGCTGTTGTGACTACTTCGTCTCAGCCACGAAGACGCCCTTGCCCTGCTTGCCGTACACCAGGCCGCGATCGTGCAGCAGGCCGAAGGCCCGATTGATCGTCGCGAGCGAGACGTGGTTCTTGTCTGCGAGTTCGGCGGTGGAGGGCAGCTTGTCGTGTGCCTTCAGCTCTCCGGACTTGATCTGCCCGGCGATGCCGTCAGCGATGCGGCGGTACTCGGCCTGCTCGTATGGCACGAGGGGAAGTTTAGGTCGGCAAGGTCCTCACTCACCACAAGATCAGCAATATGTCAAGGTCTGACTTAAGTCAAGTCATGACGTATGTTGGTTTCGAGACGCGGCCGGCAAGGCACGATGTCAACAGCCAGGGACGGAGTCACATGGAGCCGAGTACCGACACGGTTGGAGACGGGCCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 5808072-5808647 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058322.1 Micromonospora carbonacea strain aurantiaca chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5808072 28 100.0 33 ............................ TCCGCACGATGTCCGGGTAGCCGAACCCCGGTA 5808133 28 100.0 33 ............................ CAGCTCCGCGACGGCCTCGTCATCGCCGTTGGC 5808194 28 100.0 33 ............................ ATAGGGAAGTGTAGAAACTGGGGTCACTTCGTC 5808255 28 100.0 33 ............................ CGTCAACTCGACGACGCAGGTCGCCGCCGCGCT 5808316 28 100.0 33 ............................ TCGAGCCGATCGGCCCGCCGACCGATCACGAAC 5808377 28 100.0 33 ............................ CGCCACCGACGCCGCCGTCGGCGCACCACCCTC 5808438 28 100.0 33 ............................ GCACGCTGTCGGCTTGACCGCCGTGGACGCGAA 5808499 28 100.0 33 ............................ CGTGCTGTCGACCACCGAGGCTTGGCCCGCACG 5808560 28 92.9 33 ...CT....................... TCCCGGCCCGTTGTGCGGGTCCAGCTCCACGAC 5808621 27 75.0 0 ...CT..G......T..-......CC.. | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.8 33 CTGTGCCCCGCGCACGCGGGGGTGATCC # Left flank : GCGATCTATCTCGACAAGCCGCACGAGACAGCCGCCTACAACACCATCTGGGCCGACATGGCCAGCCGCGCCCTCAACGAGTCTCGATCCCAGAGCCTGATCCAGCAAGCCGCAGAGGAGTACTCCCGTGCCTGACCTGACCGGTGCCGTCTGGCGCAAGTCGACCCGAAGCAACAACGGCGGCAACTGCGTCGAGGTCGCCGACAACCTCCCGGGCGTCGTCGGGCTACGTGACAGCAAGGACGTGACCGGGCCGGTGCTGACCTTCACCCCGTCGTCCTGGGCCACCTTCATCGAGGACGTCAAGGCCCAGCCACCTGGCTGCTGAAACTGGCAGGAGGCTGCGCCACGGTTCCTCTCCTGCCCACCGAAAACGCCGGTCAACTCGTAGGCTGTTCACCACCTAGCCTGGACGCCCAGCCACCACTCAGGATGTGATCTTGGCCAGCAAAGTGAATGAAATCCGCGCAGTTGATCTATGGCGCCCCAGGTCAGGAAGC # Right flank : CGTGTGTCCTGTAGGTGTGAAGCTGCCGCACAACGGCAGTCGGGGCGATGGCGCGCTGCGACTGTCAGCGACTACTATCGATCGGCGCAGTCGCGCACCGGTCGTGATGTTGCAGTGACCTGGAGTCATGGTGCCTCGTCCCGAACGCCAGATTGACCCTGAAGCGGGCCCCATCCAGTCGTTTGCCGCAGAGCTTCGACAGCTCCGCGAAGCAGCAGGCTCGCCGAAGTACCTCCAGATGTCGCGCGCGTCGGGCCGGTCCAGAACCGCCCTGGCCGAAGCTGCCGGCGGCGATCATCTGCCCACCTGGGAGACGGTCGAGGCGTTCGTCAGGGCATGCGGCGGCGATGTCCGTCAGTGGCGGGTGAGGTGGGAGACGGCGCAGGAGGCGATACGGCCGGCAGAGTCGCCGTCACGCAGTGGCGCGGCAGCTACCGTCGCCGATCTCCCTGACGATGCGTCGCCCCTGGTCGCCGGACAGCCGGCGATCCGCCGTCGGC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTGCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 6631005-6630001 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058322.1 Micromonospora carbonacea strain aurantiaca chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6631004 28 96.4 33 ...C........................ CGGTGGTCTCCAGGGTGGCCGTGGAGTCCTCGT 6630943 28 96.4 33 ...C........................ GGCTGCGGCGGCGTTCCCCGGCATCATCGAGGA 6630882 28 96.4 33 ...C........................ GCGCGCCCGCCTGGTCCTGGCGACCGGTCGCAC 6630821 28 96.4 33 ...C........................ GACCGACCCGACGTTCAGCATGAGCGGATTCCG 6630760 28 96.4 33 ...C........................ CGTGTCGAGCGGCGTGCGGGCCGTGAGTGTCGG 6630699 28 96.4 33 ...C........................ CATGAAATTGGGCGGGGACGACTGGACGGTCAC 6630638 28 96.4 33 ...C........................ CCGTCGACACCCGACATCGGGGCCCAGTCCAGA 6630577 28 100.0 33 ............................ GTCGACGGTGGTGGGGGCGGTGCGGGTCAGCAG 6630516 28 100.0 33 ............................ GGGATGAGATGGCACGCACGTTGCCGCCGATGC 6630455 28 100.0 33 ............................ CGGGCCCGGGCAGGGGGCAAGCTTCGACATCGA 6630394 28 100.0 33 ............................ CGAAAGTCTCAGCCCTCGGCTCGGTCGGTGAGA 6630333 28 100.0 33 ............................ CTGCCCGTACGTGAGCGCCAGGTCGGTGCCCCG 6630272 28 100.0 34 ............................ TAGCTGGGCCGCCGCATGGGCGTATCCGGCTCAC 6630210 28 100.0 33 ............................ GTGGTTTTCGGGCACCGAGCAACCCGGCGTTCG 6630149 28 96.4 33 T........................... CACGGTCCGGTCTACGTCCGGTGAGGGCGGGCC 6630088 28 100.0 33 ............................ CACCGCTTCTTCCGGTAGGGCCCGGCCGTGGGC 6630027 27 92.9 0 .....................-..G... | ========== ====== ====== ====== ============================ ================================== ================== 17 28 97.9 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : AGCCGTAGAGCCCCAGCGTGACCACGCCGCCCGCGATCCAGAGCAGCCCCCGGTGCTCCCGCCAGCCCTGCCACACCAGCCAGGCCCCGCCGATCTCGGCGAGGGCGGCGAGCAGGAACAGCAGGATCGAGCGGGCGACCGTCATGCGTCAGACCGTAGCCCTGTGATCCCTCGTCAGCGGTAGTTGGTGTGGAGTTGCCGAACGGTCGTGGGGGTAGGGGTGGGTGTGCGATCCGGTTCACCGCCTACTCAGGCAGAGCCGAGCGGGCCGGGGCCGGCATGGTCGTTCGTCCTGTGGGGCGCTCCACCTTGTCGCCTTGGCCCCCTTCTCCGTCGTGGGGGTCGGCGTAGGACGGGATGGCGGGGGCATGGTGTGCGCCAAGCGCGACGAGTCAGCGGTACCTTGTCACCAGTAGACGGGCGGCACGGGCGGAGAGATCTTGGTCAGGCAAGTGAATGAAATCGACGTTGTTGATCTTTAGCGGCCCAGGTCAGGAAGT # Right flank : CACCCGGTAGCGGACCCAGGCCGTCAAAAGGCCGGAGGAGGGCGACCAACGACGACCAGAGCCGCCGAGGTTCGCCCAGCTCACACGGCGCGGCTCGCTGCCCGGCTAAGAGCCCGACCGGGCCCTTAGCGGTAGTTGGTGAACTGGAGCGCGATGCCGAAGTCCTCGCTCTTGAGCAGGGCGATGACGGCCTGGAGTTCGTCCTTCTTCTTGCCGGTGACCCGGAGCTGGTCGCCCTGGATCTGCGCCTGGATGCCCTTCGGGCCCTCGTCGCGGATCTTCTTGCTGATCGCCTTGGCCTTGTCCGAGTCGATGCCCTGGACCACCTTGGCCTCGATCCTGAAGACCTTGCCCGAGGCGCGCGGGTCGCCCGCGTCCAGGGCCTTCAGCGAGACGTTCCGCTTGACCAGCTTCTCCTTGAAGACGTCCAAGGCGGCCAGGACCCGCTCCTCGGTCTCCGCCTGGAGCCTGATCGCCTCGTCGCCCGTCCAGGAGATCTC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //