Array 1 306784-305615 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJZU010000003.1 Pectobacterium brasiliense strain BL-2 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 306783 28 100.0 32 ............................ TCGGTTCGCTCAGCCGTCTTGCTCCACGTTGA 306723 28 100.0 33 ............................ AACAATATCAAGCATTTACATCGCACTCTTTAT 306662 28 100.0 32 ............................ TAATCGGATTGATTCTTTCAAATCTCCGGCTG 306602 28 100.0 32 ............................ ACATACAAACTACCTCCTGTAAAAGAAATTCT 306542 28 100.0 32 ............................ GATTTCAGGTTGAGTTAATCCCTCGCCGTGAG 306482 28 100.0 32 ............................ CACAGCAACTAACTCACGCTGAATAACATTAA 306422 28 100.0 32 ............................ ATGTTTATGGTCAAGAGTTCGTTGATATGCTT 306362 28 100.0 32 ............................ ATCAGAGCTGGACAGCAGGCCGTCATACTCAA 306302 28 100.0 32 ............................ GAGAGAAACCGACAGAATCCAGAGCATCAGTG 306242 28 100.0 32 ............................ ACAGGCGATGAAACCATTAGCGTCAACGGTAC 306182 28 100.0 32 ............................ AAGAGGCGACATGGATTTCGGAGTCGCATCCC 306122 28 100.0 32 ............................ AATTGAAATACGGAAAGCATGCGCATAATTGC 306062 28 100.0 32 ............................ TGAGTAGTGCCTTCCACATCAGAACCGGAACC 306002 28 96.4 32 ...........T................ GTAAACGGTGTCGTTAGCCACAAACGGGTTAC 305942 28 85.7 32 A..........T....AT.......... ACCGGTACTATCTGGCGATGACCCAGTTGGAA 305882 28 85.7 32 ........T.TT.....T.......... CATTTTTTCCCGTTCCAGACATCGAATTCCGT 305822 28 92.9 32 ...........T...A............ CATTTTTTCCCGTTCCAAACATCGAATTCCGT 305762 28 96.4 32 ...........T................ GGGCGCAATCCGCCCTCGGGGGATTATTCGCA 305702 28 100.0 32 ............................ GGAGGGATTAGCTAATGGGCTGGATTAAGTGC 305642 28 82.1 0 .............C........C..TGC | ========== ====== ====== ====== ============================ ================================= ================== 20 28 97.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGCTGGAGCAAACGACCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGTTAACGGAAGCAGAAGCCGCAGCACGCATTCCCGATGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTGTGGAACATGGCCCGCTACAGGATGCACCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTTCCCTGGTTCTGACCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGACAAAAAAGTCGTATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : TTATCGAGATGCGTCACTGGTGCGACGCATTTTAGAGGCTTATTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTATTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTGCCTTCATATGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAACGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCGGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 315752-317761 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJZU010000003.1 Pectobacterium brasiliense strain BL-2 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 315752 28 100.0 32 ............................ TCCCCGCCAGAGTCCACTGCCATCGCCAATAT 315812 28 100.0 32 ............................ TAATTTCCTTGCCGTTGACCACCGCGATTTCC 315872 28 100.0 32 ............................ TTGCCCATTAACGGCGGGTCGCCGGAACGTTA 315932 28 100.0 32 ............................ AGCCTGCCGGATAATCTGTCTGTCGGTGGCTA 315992 28 100.0 32 ............................ GATATCGAGTAAGCCAAGTTTAAAATAACAAT 316052 28 100.0 32 ............................ TTCTGATCCCGCGCAATATGGCGGAAGGAGTC 316112 28 100.0 32 ............................ TTGTTATACCAGTCAACAGAGTCTATCCGTGC 316172 28 100.0 32 ............................ CGATCACCAATCCTTACAGCTACGCTTAACGC 316232 28 100.0 32 ............................ AACTGGAGAGAAACGTATGAGAATAGTTATTG 316292 28 100.0 32 ............................ CGCGAAAAGCGGCAATGCGCGAAGAGCTTGAC 316352 28 100.0 32 ............................ ACCGAGCGGCAGAATGGTCTTTTTCAGCCAGT 316412 28 100.0 32 ............................ TATCAAGCCGAACAATTGAAGCTGGGGCGTTC 316472 28 100.0 32 ............................ TATACGTGGGCGCATGAATGAAACCACTGGAG 316532 28 100.0 32 ............................ ATGCGCCAGACTGTAGCTATCCGCTACGGCGT 316592 28 100.0 32 ............................ TGTCCAATGGCGCAGAAATGCGTTTCTTATCT 316652 28 100.0 32 ............................ GCATAGGCAATCAACTGTCCGATCATTTGCGT 316712 28 100.0 32 ............................ AGTTCGCAGAAGCTGAGCGGGACGAGCATCAA 316772 28 100.0 32 ............................ GTCGTGCCAATGAATATCCCCAGTTCGCGAAT 316832 28 100.0 32 ............................ ATAAAAAACCCCGCAGGTGCGGGGTTCTGTTT 316892 28 100.0 32 ............................ ATCTCAGTGAAACGCTGCTGTTTATCCAGTAA 316952 28 96.4 32 ...........G................ AGAGTCAATAATGTACGATGCGGTTTTTTTCC 317012 28 96.4 32 ...........G................ GGCTGCGCATGGATCAGAGTGCATTACGCAAA 317072 28 96.4 32 ...........G................ TTTTGTTGCCGCCAGATAATAACTAAGCCGTC 317132 28 96.4 32 ...........G................ ATATTCATGATGGCGAACCCAACTTCTTTCAT 317192 28 96.4 32 ...........G................ TGGATAGTCTGGGAGACCAAAGTGAATGCTTT 317252 28 96.4 32 ...........G................ TCCGCGAGCCGGATGCTTGGGCCGGTAACTGT 317312 28 96.4 32 ...........G................ CAGCAAAACAGCAATTCCGTGGAAGGAAACAG 317372 28 96.4 32 ...........G................ AGGTGATATCACGGTATTCAGGTTCTCAGTGC 317432 28 96.4 33 ...........G................ AAACAGTGGAGCATTAGCGCCGGAAAGCTGGAT 317493 28 96.4 32 ...........C................ AAACCACCTCGTTCGTCGTCATGTTCGTCAGC 317553 28 100.0 33 ............................ AGTTTCTGATGGCCATGTCGGCGACAGGGATAA 317614 28 100.0 32 ............................ GTGCATTGGGGCTTGGTGCCATTTCAATCGGG 317674 28 96.4 32 ...........C................ GTGGCAGCAAAATTACCAGCCACAGGCTACGC 317734 28 78.6 0 .............C......T...TCCG | ========== ====== ====== ====== ============================ ================================= ================== 34 28 98.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAGCATGACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCAATTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAACTTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCTGGCTACA # Right flank : GCGACATTAAGTGCTGCTGTCTGGCTATTATCGAGGTAGCATTATCGTCAGTGTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACGTTTTTAAGTAACGGGTTTCTTTATGGGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCGAATCCCAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGATCCTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //