Array 1 320426-321716 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMYD01000003.1 Streptococcus salivarius strain BIOML-A16 scaffold3_size328001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 320426 36 100.0 30 .................................... TTTATTCATCTTAAACTTCCTTACAATTTC 320492 36 100.0 30 .................................... ACTAGGCAAGTATATCAAGCCTAAGTGTTA 320558 36 100.0 30 .................................... ATGCTAAAGTATACACTATGGAAGACTATG 320624 36 100.0 30 .................................... CATTCTACTTTGTTAGCATTATAGCGTTGT 320690 36 100.0 30 .................................... AGAAATTCAGCATAATTCTGATGATAATTA 320756 36 100.0 30 .................................... GCTTTAGCAATAGCATATACATAAGCACTA 320822 36 100.0 30 .................................... TAAAATGGTCTACAATCAATTCTAGACCCT 320888 36 100.0 30 .................................... CGAAACTCACCACGGTATCGGTAAGGCTCG 320954 36 100.0 30 .................................... GTTAGGGAAATTAGCTACCACAACCCCAGA 321020 36 100.0 30 .................................... CGTGGTGTTATCTGTCACGCTATCAGCTTT 321086 36 100.0 30 .................................... TTATGATTTAGCAGATTTTGAAAGCATTCC 321152 36 100.0 30 .................................... CACGCGCAACTTTAAGGATAGCCATGAGCG 321218 36 100.0 30 .................................... TATCATCAAACACTAACGACTGTATCTGGT 321284 36 100.0 30 .................................... TCATTACCTAACGTTTTCAAGTTACCAATG 321350 36 100.0 31 .................................... AGATAAAATGCGTTGTCCATTAAGGATAAGA 321417 36 100.0 30 .................................... ATATAATACTGCTAAAAACACCCTCTAAGG 321483 36 100.0 30 .................................... ACGTCTCTAATGTAGTTATTTAGATTGTTA 321549 36 100.0 30 .................................... TTCCAAAATGTTACCCCCCTATTAGAAAAC 321615 36 97.2 30 .........................A.......... ATAGGTATTATATGTCCACTTCTCGTTTTA 321681 36 83.3 0 ............AC...............T..CTC. | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GAATTTTAGTATTCGTCAATAGCTTGTCATATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGACGGATTGGGAGGTTTCAACAATTTGTTTTAGATAAAGATTACATTTTGATGCCCTATAATAACTAGTAATTTGGTAATGAGTATAGATAGTCTTGAGTTATTTCAAGACTATTTTTTTAGTGTTTAGTGTTTCGGTATAAAGTTGAGTAGAAGAATCATTTTGTTAGAGAGTAGATTATAAGGTTTTGATAGAGGAGGAGTTAAATTGGTTGCCATAAGATTCCTAAGAAATACTCCAATATGGTGACAGTGACATTTTGTCTAAAACGTTGATATATATAGCTTTTTAAGGTATAATAAACATAAAAACGGGATCATTTTGAAGCTGAAGTCATGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAAAAAAAGACAGTCTACGAG # Right flank : CCTCTTTATAACGATTTTCGGTTGACTTCTCTTCAAACGAATCTTATCATAGAGGAGTATAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGATTTTGGTCGTGGCATTAGGGCAGATTCTTTACCTCTTGCCATGACAAAAGCGTCTGTGTTCTTATCACATATTATTAAGGGGTATGGAGATAAGGCTTTACCTGAGCCGACTGCGGTAAGCAGCATTCCTAATGAGGAAGAACTCGTCGTGTTAATCCAAACAGAGCTTGATTAAGACTAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAAGACGACTAAAATTCCTGCAAAAATTTGTAAATACGAGAAGGGTTCTCCTAAGACGACGACAGCCGCTAGAATTGAGATAATTGTCGAAATCCCAATAAAGGATGCTGTTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 362652-363544 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMYD01000001.1 Streptococcus salivarius strain BIOML-A16 scaffold1_size585020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 362652 36 100.0 30 .................................... TGTTGAATACGGAACTGAGCAATGCGTTGG 362718 36 100.0 30 .................................... AATACCAAATGCTTCAAATACTTCAGAAAG 362784 36 100.0 30 .................................... TTTCGCTCGTATGCTTAACCGCTTCGCTCT 362850 36 100.0 30 .................................... TAGCTTGTGGTGCTGTATCTGTTTTCGGTC 362916 36 100.0 30 .................................... TTCTACTAAATTCTGCATTTTAATCCTTTC 362982 36 100.0 30 .................................... TAATCTCTTTGATGTCAGTCCCAACCGCTG 363048 36 100.0 30 .................................... TGTTATTCAGAACTTTGTAAGTAAAGGTGT 363114 36 100.0 30 .................................... GATTGGTCTTTTTCTTGCCGAACAATGACA 363180 36 100.0 30 .................................... CAAATGCTGAAACAGCAACGTCGTTGGTAG 363246 36 100.0 30 .................................... TACTGGTATGACTAACCTTGGTAATGGTAT 363312 36 100.0 29 .................................... AAAACCACCAACCCAACATAAAGGAGCTA 363377 36 100.0 30 .................................... CTCCGGGCTTGCCGTAACTATAATCGTCAA 363443 36 100.0 30 .................................... TATCGCGAATGGTAATAGCATCTTCATCTA 363509 36 88.9 0 .............T...............A....GG | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTATTTCAGAGGAATCTTATGATAGTTTTTATAAGCAAATCAGTCAGATGGTCAAAAAGTATCCAAACTTAACCTTTATCTTATTTCCTAGTGACCAAGGCTATTTAAAGATTGATGAAGAAAATAGCAAGTTCGTGAATATTTTATCTGACCAGGTAGAGCATTTGTACGATGTTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCAACGAGAGAGGATTTTAGGATGTCCTTAGAGACCGTAACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGCCTCACACTTGTTGATTCTGTAATTTTGAATATTCTAAATCAGCTGTTTCAATTTAATTACCGTATAAGATATTCACAAACTCCTGATGAGGAGCTATTGCATAGATATTTAGAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATGAAAACGTCAAAATTTCATTTGAG # Right flank : GTTGATTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGATTGTCAGGCTGACCAACCTCTTTGACCTCAGTCAAATTAAGGATAGGAAGGCTCTGTTTAAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTCACCCAGGTATTGTCCTTAAAGGTTTGGTCACTTCCTGTCGTCGCCAATCCGTAAACACCTGAATCGGCGATACAGTGGATAATTCCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCTGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //