Array 1 255925-254951 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSAO01000002.1 Salinivibrio sp. VYel5 NODE_2_length_589101_cov_198.351348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 255924 28 100.0 32 ............................ TTGTTGCTTTAAAGTCCTTAACTAATCGCTTA 255864 28 100.0 32 ............................ AACATCCAGGGCAAAACCCTCGACCAGTTTTT 255804 28 100.0 32 ............................ ATCAATATTGCAGGCAGGCCAACCGACTTACG 255744 28 100.0 32 ............................ TCCATTAGCTAGAGGCATAATAGTCTGGTGCT 255684 28 100.0 32 ............................ TGACACATCGTCAACAGGGTCGCCATTGGCGT 255624 28 100.0 32 ............................ AACTACGGGGGGCACATTCCTTTGTTGTTCTT 255564 28 100.0 32 ............................ ATAAGGGTGTCGGCACTCCATACTTGTTTTTT 255504 28 100.0 32 ............................ TCGCCTAGAGCAAGCAGTGGATAGTCTAGCGT 255444 28 100.0 32 ............................ TACAAGACCTTGCTGATATTGTTGACGGCGGT 255384 28 100.0 32 ............................ ACGACTGTATGTTCTGATCGATATCGGCAAGA 255324 28 96.4 32 .............T.............. GCTTAGATGCAGACGATATGGCGAAAGGGGCT 255264 28 92.9 33 .............T....C......... ATCTAATCGCCCCCTCAAGAAACCAAGTCTTTG 255203 28 78.6 136 ...G.........T.......G...GTG ACACAAGCCCCAGCACGGTGTTGGATATGTGGAAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTAGCCTCAATGTCGGAGGCGCGCGGCGCAAATCACACCAAGCTTGTACGATCGAGTTGGCGCTT 255039 28 85.7 32 ..C...CTA................... AAGCTGGATATGGGTGATATTGACGGTCTTAC G [255035] 254978 27 85.7 0 .....................G-...TG | C [254953] ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 15 28 96.0 40 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTGAAAGACTATGCCTACTTTAAACGCTGGAACTACAAATCGCCGCAGCGACTGTATAAAAAACTCGATCGGCGAGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGAGGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGGACGACAAACGCTGGTCCCTGCCTTTTATTCAAGTGACCAGCCTGTCGAGCCAAAAACGAGCAGGGCAGCCAAATACCGAGTTCGCCCTGTATATCGAGCGGGAACTCACCAAACAGCCGCCCAATAATGGCCAACCATTCACCTGTTATGGGTTAAGCAGACGAGAGCCCGACCAGCAAAGTGCGGTGCCGTGTTTTTGAGGGGGCAACCCCTCTTTACCCCTTCTTTTTGGCTCTTTAAAAATAAACCGAAAATACAGTCAGTTACAGCAGGTGCTTTTTAACAAGGGTAAAAGTCCATTTTTATCCTAACGGCCTGTTGTCACTGACGATTGTTACGTTATTCTATA # Right flank : ACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATTGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCACTTGGGTAATAGATGGCTGACATTGCACTGGCGCTTGTCCGATCTACGCACAGGCAGCGACGATGACACAAGCCCCAGCACGGTGTTGGATAGGTGCACATTGCTAACGGGCGCCTGTCACGATCGAGGTGAATCGTTGGCGCCGATGTCGGAGGCGCGCAGGCCGCTTGGGTAATAGATGGCTGACATTGCACTGGCGCTTGTCCGACCTACGCACAGGCAGCTTAGAAAAATTCGGCTGGCCGTCGATGTTAGCCATGATGGTTCACTGCCGCATAGGCAGCGTGGGTGACACAAGCCCCAGCACGGTGTTGGATATGTGGAAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTAGCCTCAATGTCGGAGGCGCGCGGCGCAAATCACAC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 267570-266702 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSAO01000002.1 Salinivibrio sp. VYel5 NODE_2_length_589101_cov_198.351348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 267569 28 100.0 32 ............................ TCCCAGCCGTGGCCGTGAAAAGCCTGCCGTCA 267509 28 100.0 32 ............................ TCAGTCGCAGAAACTAAACACAGTTTTGAAGC 267449 28 100.0 32 ............................ GGAACACTAAACACCGAAAAACACGCAAAAAA 267389 28 100.0 32 ............................ TCTAGTGTCAGCAAGTGCGCGATCAAGTTAAG 267329 28 100.0 32 ............................ TATGAAGAAGTGCGGCAGAAAGCGGAACAGGC 267269 28 100.0 32 ............................ TGCGCGTCACGCCTTACGTGTTCAACAAAGAC 267209 28 100.0 32 ............................ GCAAACTGTTTGCACTGATGCAGGACTATGCA 267149 28 100.0 32 ............................ TAGCGGTTTCACTCCTTTGGCCACTTGCTTGT 267089 28 100.0 32 ............................ CGCTCAAATCACACAGGCACTCAGACATTGAG 267029 28 100.0 32 ............................ AGCAACGTAAAAAAATCCTGAAGGTTGTGCTT 266969 28 100.0 32 ............................ CAGTGAAAATCACCATCGGCATCATGCTGAAC 266909 28 100.0 32 ............................ AACGGTATCAGCTTTGCTCCGCTCGACGTCAT 266849 28 100.0 32 ............................ GTTAGCGCGAATGACATAGAAGAACACATCAC 266789 28 100.0 32 ............................ TTCAGTCGCAGCGTAGTACCGTGTGATGTTCG 266729 28 82.1 0 .............C.......G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGGACGATCTGTTACCCCTACCGCATGTTGCCGCGTTTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGCAAGCGTTGGTATGATATTGGTTTGAGCCATTTCGAACGCTGGTCGCAAGATGTGGGTGTGCCGTGGCAAATGATCAAACCGCACCTATTGGATACGATCAACCTGGCGCGAAATATGTGGCCAAATCAACTTAAGCAATTACCGATGTTAACGGAGCACAAAGCGATGCTGCGTGATCATTGGAAAGCCCTGCACGAGAACTTCACCATTGATTCATGATCCAGCCAAACCGGGCGCTAAATCGGCGCCTTCTTACCCTTATTTTTTGACTATTTAAAAATAAACAATAAATACAGATAGTTACGGAATCCCCTTTTAAACAAGGGTAAAAGGCCATTTTTATCCTAACAGCCTGTTGTCACTGACGACTATTAAGTTATTCTATT # Right flank : ACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTTTCACGATCGAGGTTAATCGTTGGCCTTAATGTCGGAGGCGCGCAGTCCGCTTGGGTAATACATGACAGACATCGCACTGGCGCTTGTCCGACCTACACACCATTTTAATATCGGCGGTGCCATTGGCGTACATTGGTTATCGGAATAGCCACTTTTGGCCCGATAATACCATTGGCGTAGGTGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCGACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGAGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCTAGCTTGTACGATCGAGTTAGCGCTTCTCCGACCTACGCACAGGCAGCTTAGAAAGGATTGAATGAGAAGTCTTATGTGTGCTGCTGTAAATCCAACGTTGTTCGGCTGAATCAATATGAGTCAAAAAGTTGGGAGTCACTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 271301-269493 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSAO01000002.1 Salinivibrio sp. VYel5 NODE_2_length_589101_cov_198.351348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================== ================== 271300 28 100.0 32 ............................ AATACGCCAGAGGCCAGCGCCGCCGCCGTCAA 271240 28 100.0 32 ............................ TCAAGCGAGTTGATAAAAATCCTATACTACCT 271180 28 100.0 32 ............................ GCTGCCACCTGTGGCGATTGACGAGATGGCCA 271120 28 100.0 32 ............................ GCGAGGGTGAGCCATTTAAGGAAACCTATCAG 271060 28 100.0 32 ............................ GCTAACGGTAACGCAATCGAGGTCGCCAACTT 271000 28 100.0 32 ............................ CAACCGTGTTCGTTACGTGCTTTTTGTTTATC 270940 28 100.0 32 ............................ GGATTTGCGGATAAGATGACGCAATTCTCGGA 270880 28 100.0 32 ............................ ATATCGCTATGGAAAGACCGCTCAAGGATGTA 270820 28 100.0 32 ............................ AAAGCGCAAGCGAAACGCTTGCAGGAAGTCGC 270760 28 96.4 32 ....T....................... TAGATAAGAGATAAAGGTCCGTGCGTACGATG 270700 28 85.7 146 .....................G...GTG ACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCGCTTGGATAATAGATGGCTGACATTGCACTGGCGCTTGTCCGACCTT 270526 27 89.3 32 ....T..A.-.................. AATTCGGCTGGCCGTCGATGTTAGCCATGATG A [270525] 270466 28 100.0 32 ............................ AGAAGATAACCGCACACCAGAGCCAGCACAAA 270406 28 92.9 32 ...........T.T.............. TGCCAGCGTTTTTTGTGTGCGCTTGTATTCCG 270346 28 92.9 32 ...........T.T.............. TTGCGAGGGGCCAGCACTTCGTCACGGATTTG 270286 28 92.9 32 ...........T.T.............. GCTCGGGCGGGTTTTTTATTGCTTGCGGTGTT 270226 28 92.9 32 ...........T.T.............. ATCAAAAAATCAAGCAGATTCAAGACGCCGGT 270166 28 96.4 32 .............T.............. CGCAACTAGCCGAGGGCGAAACGCCAGCGGCT 270106 28 92.9 32 ....T........T.............. TGAGTCAAATTGCTTCATTCCTCGGATTGTTT 270046 28 96.4 32 ...........T................ GTCAGCAACACGCCTCACCGCGTTTTAGTTGT 269986 28 100.0 32 ............................ GACGCACGGGCGCATGAAATACCAATCTATTC 269926 28 100.0 32 ............................ AATCCAAATCATCGGGGTCTAGGTCGAACAGG 269866 28 100.0 32 ............................ TTTTCCACATAGTAGAAATCAAATCTCAAGCC 269806 28 100.0 32 ............................ TAAAGCCAACGGTTAAAACCGACCTGAATGCT 269746 28 100.0 33 ............................ AGTTGAAACCGCGGTATCGAGCGCGATCACGCC 269685 28 82.1 136 .............T.......G...GTG ACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGATTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGGCCGCTTGGGTAATAGATGGCTGACATTGCAATGGCGCTT 269521 28 67.9 0 ..C...CTA.......A....G...GTG | G [269517] ========== ====== ====== ====== ============================ ================================================================================================================================================== ================== 27 28 95.5 40 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTTATCGTCAACATGGTCACTTTTTGGCGGCTTTAAGCTTGTATTGTGTCTTACAATGGCTACGCATCACGCTCTTTGAACGCAGGGCCGTGTGCTTGGTTTTGCGACCACGTGTACGCGCACGCCATACTTTGAAACTACGCGGTTTTAATTCACGTCGCATTAAAGCAATCACATCATCTTGGCGTAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTCCTATCTTCCCACGCCATTTCAATGATCCGGTCTACGTCACCAGGCTCAGTCAGTCGCATAGTCTCCTCCTCGCATTGGACTAATAATTACGTATACGTTGAGCAACGCGGATCATTGAAGTTGGATACATAAAACCCCTTTGTAACCCTTCTTTTGGGGAGGTTTAAAAATAATCATTAAATACAAAGAGTTGTGGAAGGCCATTTTAAACAAGGGTAAAAGAGCATTTTTATCCTAACAGCCTGTTGTTCCGAGCTATTATTACGTTATTCTATT # Right flank : ACACAAGCCCCAGCACTATGTTGGATAGGTGACATTGCTAACGGGCGCCTGGCTCGATTGGCGCTTATATCAAACGATGTAAATGCACCATGCTAGTCTTGATGTTGTGACTTATTAAACAATGAATATGTTGTAATTCCTTAAATGACAACTAATATGTTGTATATAGGCTGTAGTACAACATTAAAGTTGTTTGAGGGTGTGATGGTGTCACTAAAAGATATCGCGCGTGCATTGCAAGCGCGTCGCAAGTCACTTGGACTAGAGCAGTCTGACATGTACATGCGTATTGGCATGAAACAACAGCAGTACCAGCGAGTAGAGGCGGGGAGTGATGTCCGGCTATCGACTTTGCTGCGTGTGCTCGAAGGGCTCGACCTGACATTAACGCTTACGCCCAAAACGTCTCAGACTGTCGATGAGCCGGTAAACTTCGATCGTTATAAAGATGATGATAACGACGATCTCGACTTTTGGTTAGGGACGGAGCGCAGCGATGA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.40, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //