Array 1 3557049-3557567 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041765.1 Tomitella sp. HY188 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3557049 29 96.6 32 ............................C GCGGCCTCTTCGATGACCTGCGTCCGCTCCAG 3557110 29 100.0 32 ............................. ACGGACAAGATCATCGCACCGATCATCCGACG 3557171 29 96.6 32 ............................C ATCTTGAGGGCGCCGACTATCTTCTCGATACG 3557232 29 96.6 32 ............................C CAGGCTTCAATTACGTAATCGGGAGTGGCACC 3557293 29 100.0 32 ............................. TCGCCGAGAGCCCGTGCGCGCGCGATGTTCTT 3557354 29 100.0 32 ............................. CACAAGATCAAACCGTCGACGCGCAACGGGTA 3557415 29 100.0 32 ............................. TCCGTGGTGATGGGACTCTGAAACTCAAAGAC 3557476 29 100.0 32 ............................. GTAGTCACTCACTGCGCTTCACCACCCCACGG 3557537 28 89.7 0 ........................-..AA | GC,G [3557558,3557561] ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.7 32 GTGCTCCCCGCGAACGCGGGGATGATCCG # Left flank : CGGACGACGACGGTGCCGGAGCGGAGGCCGAGATCCTCGAACTGTGGGATGACAGGGTCGGCCGCGTCGCGGGCGGAGTCAACTACGAGGAAGACGTGCCTTGGTAGTTTTCATCCTCACCGCCTGCCCTGCCGGCCTCCGGGGGCATCTGACCCGGTGGCTCATGGAGGTCAGTGCCGGCGTGTTCGTAGGGCATGTCTCCAACCGCGTGCGCGAACACCTGTGGAGCCAAGTGGTCGATCTGGTCAAAGACGGGAAGGTGATCATGGTCTATCCCGAGGACAACGAGCAAGGGCTTGCCTTCCGGACACACCGGCACGAATGGACGCCGGTCGACCTTGACGGCATCACCTTGATGAGCCGCCCGATGGACACTCAAGCAACTCGAGGCCGGGTTCGCCGTGGATGGAGCACCGCATCCCGACGACGTCGCCACTCGTAGCAGATCCAAACTGCTCCTCGATTCAGTAATGACATAGAATTCGTACTGGTCAGCAAGT # Right flank : ACTCGTGGAAGCAATCGGCTCGGCCAGTAGCTTCGTGAACACCTCCCGCGGGGTGAGGAAGCCGAGTACCGCGCGTGGCCGGTCGTTGAGCTCGTCGGCGATCGTGTCCAGGTAGGGCTGGTGGTCGGTGATCTCGATGCCCTTCGGCAGGTACTCGCGGATCAGCCCGTTCGTGTTCTCGTTGGTGCCGCGCTCCCACGGCGAGTGCGGATGAGCGAAGTACACCTTCAGGTCCGTGGCCGTGGTCAGCGCGGCATGCCGGGCCATCTCGGTCCCCTGATCCCAGGTCAGGGAACCGAGGATGTGCCGGGGCATGCCGCTGACCGTATCGATGAGCACATCTGCGAGGCCGTCGGCGTTCTTACCTGCGGGAAGACCGCAGATCAGGGTGAACCTGCTGGTGCGCTCGACCAAGGTGGCGGCCGCGGACTTGCCGCCCTTCCCGATGATCAGATCGCCTTCCCACGATCCAGGAACCCTGCGGTCGGAGGCCTGCTCGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGAACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3558697-3559944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041765.1 Tomitella sp. HY188 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3558697 29 96.6 32 ............................C CACCGTGGCCTGCATGTGTGCGCGATGGGCAT 3558758 29 100.0 32 ............................. CCGAGGTCCCAGAGGAGCTGCGACCATTCCGG 3558819 29 100.0 32 ............................. GTCCGCGTGTTGTCCGTTCGGCGCGCAGGAAA 3558880 29 100.0 32 ............................. TACGTGCCCGCCTTCGTGATGCCCGAATCAGA 3558941 29 93.1 32 .........T..................T CGCGGCCACATCATCCGCGTGCTTCAAGTCCA 3559002 29 93.1 32 .......................T....T TGTAATTAGTTATCGTTAATTGGAATTGCAAA 3559063 29 96.6 32 .........T................... CGGCGGCATCCGGCCGGTAAGCTTCGTGACCC 3559124 29 100.0 32 ............................. TTGATCCCCGTACTGGAGGTGAGCGCGGCAAT 3559185 29 100.0 32 ............................. AAACCCGCTGGTCGGCGAACTACACGCGTGTG 3559246 29 96.6 32 ............................C TCCACACCAGACGGAGTCCTGTAGTCGTCCAA 3559307 29 96.6 32 ............................T TACTGGGTCGTCGCGGGTGACACCTGGTTGAC 3559368 29 96.6 32 ............................T GTAGTCAATTGCTGACTTGCGTCCACGCTTGC 3559429 29 96.6 32 ............................T CGTATGAGTCCGCATTAGCACAATTGTCGTGG 3559490 29 96.6 32 ............................T TACGTAATCGGGCGTAGCACCACGGCCAAGCG 3559551 28 93.1 32 ....-.......................C AGTCCGACACTCTTCGAGTCCGAGCCGATCCG 3559611 29 100.0 32 ............................. CTGCGGCACCGGTTCGCGACGCGCGCGTACGC 3559672 29 100.0 32 ............................. GTGAACGCCTGGTCCCTGCCGGGTGTGCTGGG 3559733 29 96.6 32 ............................C CCTGCCGGATCCCAGACGATGTTCGGTGCCGA 3559794 29 96.6 32 ............................C AAGTCCCCGGATCCGTTCGTGCAGGGCAAGGC 3559855 29 86.2 32 .....TT.............A.......T GGTCGCAGCTGCTCTGGGACTTGGGCTTCCGG 3559916 29 82.8 0 ..A....T.......C...........TC | ========== ====== ====== ====== ============================= ================================ ================== 21 29 96.1 32 GTGCTCCCCGCGAACGCGGGGATGATCCG # Left flank : CGCGTAGATCCACTGGTAGATGGCCTCGTGTGAGATGGTTCGGCCTCCGGCGTCAGGGGAATGCACCATGGTGTCCACGCTGTCGTCGGTAGCTTCACGGTGCAACCTGCCGGCGATCTGGCGGGGCGTGCGTGAGTGGCGCAGATCGGTGCGGACCCGCAGCTCAAGCTGCGGGTCCGCGTCGATCTTGCGGGTCTGTGGTCTGCTACGGCGCCCTCGTGCTGCGCGGTCGGCGGCCACTGGCCGGTAGCCGCCGGCCGCGCTGGCGTTGCGTTTGCGTTCGCGCCAGATCACCGTCGGGTTCCGGCCGATGTCCTCACCGATCTCCGCGTCGGACAGACCGGCCTTGATCCCGACCGCGATCTGCACTCTGTCGTCCAGCGTCAGCTGCCGCCGCCCCAACCCACCACTCCTACCGTGTCACCAGCATCATTGCTACGACGCTATGACACCGCCGGGGATGATCCGTTGATCCCCGTACTCGTGGTGAGCGCGGAAAT # Right flank : CATGGGCGACGCCTGCCCCGCACCCCGCAAATCGGGACGTCATCCAAATTCGCGGGGCTACCGAGGGCTTCAGTTCGCCCTCAGCCCCCCACGTCCGCATTGCAGATGGCCACTGCGAAGACGCCCTGCGCGGTGTTCTGGGCGAGCACGTCGCCGTCGTCGCCGAGGATCCGGCAGGTGACGCTCCCGCCGTCGGCACCGGACATCACGGACAGGAACGCGCCGTACAGGTTCGACGCGTCCGCGTCCTTCGACCACGGGGTCTGCACGTCGTTGCTCAGCGACGTGCCCGAGTTCGATCCGACGTCGTAGCTGACGGTCGCCTGGCCGCCTGATGAATCGGCCTGGTAGGTGACCGGCGTAGTCCCGGTTGCGTTGTCCACGGCCGCGTCGATCACCAGGAACAGCAGCACTGACGTCACGATGCCCGCGAGGATCGCCAGTCCGGACAGCACGAGCCCCGCGATCGATACGCCCTTGTTGTCCGCGTCTCCGCTGCG # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGAACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //