Array 1 257045-253785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLEQ010000008.1 Corynebacterium sp. CCM 8862 GCM70011437_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 257044 29 100.0 32 ............................. TTTTTCTGTAGGTCCATCAGGCTCGTCGCGCC 256983 29 96.6 32 ............................T AGCAAGCGGTAGCGTACCTATGGCGTAATTTG 256922 29 96.6 32 ............................G CAGGCCGGGAGCTTTCCAAGGGGGAGAGGAGG 256861 29 100.0 32 ............................. AATCACCCCGCTTCCGGTAATCAAAACCCCAC 256800 29 100.0 32 ............................. GGGGAAAAGACGACCCGCTGGATCGTGAATCG 256739 29 100.0 32 ............................. CAGAAGGTCGATTGGCAGGCCACGGCCGGTTT 256678 29 100.0 32 ............................. CTGATGCAGCAGGACACGAAGGCGCTGCGTGT 256617 29 96.6 32 ............................G CAGTGGGTGACTCCGCCACGGTGAAGTGGATC 256556 29 96.6 32 ............................T ATCGGCATCAACATGACCAGCAATGCAATTGC 256495 29 96.6 32 ............................T TCGGGGGCATCAACAAGGTTGCCTTCGAAAAA 256434 29 100.0 32 ............................. GCGGCATGGCAGAGACCCGGGACAGCACCGGC 256373 29 100.0 32 ............................. GCGGCATGGCAGAGACCCGGGACAGCACCGGC 256312 29 100.0 32 ............................. CTTTGACGCTGTGATGTGCCGGTGCCAGTCCG 256251 29 96.6 32 ............................T GTCGGATTGCATTTGGGATGTGGTCCGATCTT 256190 29 96.6 32 ............................T GTGTGCCGGGTCGGGAAGGTTGGGGTCTTCGG 256129 29 100.0 32 ............................. GTCCCGGCGGGTTCCACCGATCAGGGTCGCAG 256068 29 96.6 32 ............................T TTTTAGTTGACGGTTGGCTAGTTGTACGGTTA 256007 29 100.0 32 ............................. GATGCGAAGGCCACGGCCGAGCAGGTAGAGGC 255946 29 96.6 32 ............................T TTTCTCCTTATACGTCAGCGGACGGGAAAGGA 255885 29 100.0 32 ............................. CTGCACAATCGCATGATCCCGCGGTTGCAGGC 255824 29 96.6 32 ............................T AGTGATACTGCCGTCACGGGATACTGCCGGGT 255763 29 96.6 32 ............................T TCGACACCAGCAACGTCATGGCCGGAATCGAA 255702 29 100.0 32 ............................. CGCTGCGGGTGGGGCCTGAAACCACCACGGAG 255641 29 96.6 32 ............................G GTGATCTGCTTGGTGGTGGCGGTGGTGGTCAT 255580 29 96.6 32 ............................G CACCTGGCCGACAACCGGATCCGGGTCCACCG 255519 29 96.6 32 ............................T GAAATCCGCCCCCTGGCCTACGACGGCGCAAG 255458 29 100.0 32 ............................. CTGGATTTCGTGCTCATCGGTCAGGTGATCGC 255397 29 96.6 32 ............................G CTCGGCGGTCACCGCGGCCAATTCGCGGGGCT 255336 29 100.0 32 ............................. ACGTCGGAGGGCCAGGACAGAGGATTTGTATC 255275 29 96.6 32 ............................G GTTCCGTCCGGCAGCTGGATCGCCGTATGCCC 255214 29 96.6 32 ............................G AATGCATTAAAGCAAAAGAATACGCTGAAAAA 255153 29 100.0 32 ............................. CATCTTTCCCAGAACTCAGCACGCCAAGCAGT 255092 29 100.0 32 ............................. CAATCGGCATTCAGTAGATGGAAAGCAGGTGC 255031 29 100.0 32 ............................. CGGTCGGCCACCGTCCACTGAGGGATTGAGAG 254970 29 100.0 32 ............................. AGCTGATAGCGCAATACCGCACGATGCCGGGA 254909 29 96.6 32 ............................T ATCCAGTAGGCCCTGTCCCGTGACTGTGGCAC 254848 29 96.6 32 ............................G GAACGGATCCCATCGAACCCGCGACACCGCGA 254787 29 96.6 32 ............................G ATAAAAGATAAGCAGCTGAACACGGCGTGGAT 254726 29 100.0 32 ............................. AGCGTGTGCGGGAGCTGATCAAACGCTCCCTG 254665 29 96.6 32 ............................T CGCTGGCATACGGGAGGACGAGCGGCAGCGCT 254604 29 100.0 32 ............................. CAAGACTGGGGCACACGCTGGGAGAAACAGCG 254543 29 96.6 32 ............................T TCTTCTAGCGTGGCACTCGACCCGCGTACCGT 254482 29 100.0 32 ............................. GTCTTTGCTGCTCTTTTCGCCGCCGAAGCCGA 254421 29 100.0 32 ............................. ACAACACACATGAAGGAAACACACATGACACA 254360 29 96.6 32 ............................A AAGACAGGGATGGGCTACGTAAGGAAATCGAC 254299 29 96.6 32 ............................G CTGCTCCGAAATCACAGCACCGACCCCGACTG 254238 29 100.0 31 ............................. TGGTTTTCCCCGCCGGGGTTGTCCACACCAG 254178 29 100.0 32 ............................. CTACGCTCATGTCATGCCGGGAGATGACCAGC 254117 29 93.1 32 .......T....................G TTATCGCCGAGGGCCCGGCGCGCATCCGCGGT 254056 29 100.0 32 ............................. TCGTTGTACTCGTTGGCGGAAAGCCCCACGGC 253995 29 96.6 32 ............................A TCCTCCCCCTCAACGGCAGACTGCGTACTAGC 253934 29 96.6 32 ............................T GATGACCAGGTCCGACTGTTCGCCATGCAGTT 253873 29 100.0 32 ............................. AAGCGCTTGGAGAAAGTGGAGGAAAAAGCCGC 253812 28 86.2 0 ......................G.C-..T | ========== ====== ====== ====== ============================= ================================ ================== 54 29 98.0 32 GTTGTCCCCGCGTGAGCGGGGCTGATCCC # Left flank : CATCATCACCGGCGGTTTCAACGTCTACCCCGTCGAGGTCGAAGAAGCACTGCTGGCCCACCCCGACGTCGAAGTCGCCACCGTGGTCGGCATGCCCCGACCCGACGGCAGCGAAAACGTCGTCGCCGCGGTGTCCCTGGTCGAAGGCGCCGCCATGGATCCGGAAGGACTCAAAGAGTTCTGCCGTGAGCGGCTGACCCGCTACAAGGTTCCGCGCACCTTCTACCACTTCGATGAAGTGCCCACCGACCAGATCGGCAAAGTGCGCCGCCGGGAGGTCCGCGACCAGTTGATCGAGCGCTACGGCTCCGAGGAAGACAAAGCAAGACTGGCCGCCGCCAAACACCGCAAAGACTAGCTTTGAAAAACCACCCGGCCACATGGGTATCCCGTCTCCCGGACACCACGTATGCTGGGAGACAATCCCCCGGGAAAACATCCAACTGAATAAAGTAAAGTAAATTCCTGCTTCACTCCTGCATTTCTGCAGGTAAAGAAGT # Right flank : CGCTTTTCCGCCAGGTAGTTTTCGGCTCAGGACGCTTGGGCGTCGTTGATGCCGGTCCCGATCCATACAGGTTCCGGCACCAGTTCAACGCCCAGGCGGGCTTTCACACCGTCACGGATTTCCCGGGCAAGGGCCGCGATGTCGGCTGTGGTGGCCCGTCCCCTGTTGGTCAGGGCGAGTGTGTGTTTGGTCGACAGTGTGGCCGGGCCTTTTCCGGGGTACCCCTTCGGGTAGCCGGCCCGTTCAATCAACCATGCGGCCGACAGTTTCACTTTCCCGCCGGGGGCGGCGAAACGGGGCATGGTTGATGATTCTTTCTCCCCGTGCAGCGCTGCCACTTTGTCAGCGGCCAGGTCTGCCACATGCTCATCGACGATCGGATTGGTGAAGAAGCTTCCGGCCGACCAGGTGTCGTGGTCGCCACTGTCGAGCACCATCCCTTTGCCGCGGCGCAGATCCAGTACCGCCTGCCGGACTTCAGCCACCGGGAAGCGCAGTGT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCGTGAGCGGGGCTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCGTGCGGGGCTGATCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 178287-176672 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLEQ010000003.1 Corynebacterium sp. CCM 8862 GCM70011437_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178286 29 96.6 32 ............................G TCGGGTTTTTCCGGCGGGTTCGGGCCGGTTGA 178225 29 100.0 32 ............................. TGATTCGGTTACGGGGCGTCAAAAGATCGGCA 178164 29 96.6 32 ............................C GTGGACCGCCCCTGCCGCAGCCTTACACTCCG 178103 29 96.6 32 ............................C CACACCCCGGCCCATCACCACCAAACCCGCGG 178042 29 96.6 32 ............................G TTCGAGCATGGTGTTCCGAGCGGCGGGAGCGC 177981 29 96.6 32 ............................G GAACCCCACATGGCTATCTACAATCGCCAGGC 177920 29 96.6 32 ....G........................ CTTCACCGGTGCCTGGGACTGGATCAAAAATG 177859 29 96.6 32 ............................C CAAATGGCCTGGGCTTTTCCGCTTGTCGGATT 177798 29 96.6 32 ............................C GACGAACGTATTCTTCCGGTGCGGTCAGGTGG 177737 29 100.0 32 ............................. GGAAGGTTTGAAAATGGAACTGACGGCAACAA 177676 29 100.0 32 ............................. GAATAATCCGGCGGCGTTTCCTGCGGACTATT 177615 29 100.0 32 ............................. GGGCGCAGAATGGCGCAAAACCACGAAACTAT 177554 29 96.6 32 ............................C CTAGGAAGAGAACCACGTTGCCGTCCCGGAGG 177493 29 96.6 32 ............................C GACACCGTCACGGCGGGGCGGGCGCTCACTTT 177432 29 100.0 32 ............................. TCATGGCACGCGAATGATGGTCGGCCACCGGT 177371 29 100.0 32 ............................. GGGTGCACCCGATAGTGGTGAAAAAGGTTGCA 177310 29 100.0 32 ............................. CGTTCAACCCCGGTGTGCGGAAGAACGAACTC 177249 29 100.0 32 ............................. ACCGATATCGCGGACGGAAAGGATTTGGGGGC 177188 29 96.6 32 ............................G GGGTCGATCCAGCTTGCCGGGGCAGCGCAAAT 177127 29 100.0 32 ............................. GCATCGCGCACGCCCTCGGCTACGTCTTTGTA 177066 29 100.0 32 ............................. AGCAGGCGGTCGCGTACCGGTGCCGGAGCGTA 177005 29 96.6 32 ............................C TGGAAATAGTGCGCACCTCGGAGCCTTACACC 176944 29 96.6 32 ............................C GTCAGCTCCATGTCCCGGCCTTCCAGCTTGTC 176883 29 96.6 32 ............................G GGGGCCTTTGCGGTGTCACATCTGACCACCCC 176822 29 96.6 32 ............................C TGGAAATAGTGCGCACCTCGGAGCCTTACACC 176761 29 96.6 32 ............................C CGCGGTCGTGCGCCTGTGTCGTCGACCCCTGC 176700 29 89.7 0 .....................A.....GG | ========== ====== ====== ====== ============================= ================================ ================== 27 29 97.6 32 GTATTCCCCGCGCGAGCGGGGCTGATCCT # Left flank : ACATCTGACATAGGAAACTCCGTCGATGAAGGAAAAAACGGACAAAAACAAAAATACCCGCAGACGATTCCCCCACCTCACTGTGACGGGAATTACGCTGCGGAAATTAACTATAGGTCAATAGAAAACAGTTTTTCTATTGACTGACAGGTTTACTCACAAATAACCCCCCATGGCCACCATTTACCAGGCAAATTGACGATCCGTCACAGGGTGACACCACCCCCGGCCGCAGGTGAAAACATCACCATCCCCCAAGGACGAGACATCAATTCCGCACCCACATCAACCGACCCCCGTTTCAGGGCAAAGTCCGTACACTGCTGCCCCACCCACCACACCCGAAACCCCGAGATCGGGCGAGGCCAGCATCTCCTCGGCCAGGACACCACAGATGATGTCTCCTCAACAGGAAAACTCCTGAAATGCGAAAAAACCTAACTCAGACTAAAGTGAAGTAAAACCGCATAGAGTAGCTGCATAATCCCAGCTTAAAAAGT # Right flank : AAAATCCCCGCTACCACAATCTTGTGGGTAGCGGGGATTTATTCGTTGAAGCGGGTTTTAACCGAGAAGCGCGTCCACGAAGGACTCGGGTTCAAACGGTGCCAGGTGGTCCGCGCCTTCGCCAAGGCCCACCAGTTTCACCGGGACTCCGAGCTCTTCCTGCACCTGGAAGACGATTCCGCCCTTGGCGGTGCCGTCGAGCTTGGTCAACACCACACCGGTGATGTCGACGACATCCCGGAAGATACGGGCCTGGTTGACTCCGTTCTGCCCGACAGTGGCATCCAGAACCAGCAGTACCTCGTCGACATGGGTCTTTTTCTCCACGACACGCTTGACTTTTCCGAGCTGGTCCATCAGCGAGGTGGAGGTGTGCAAACGGCCGGCGGTGTCGATGAGAACAACGTCAAGACCGTCTTCGACGCCTTTGGCCACGGCATCAAAGGCGACCGATGCAGGATCGGCGCCTTCTTCACCGCGGACGGTTTCAGCACCCACCC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCGAGCGGGGCTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //