Array 1 365279-370909 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIBY010000003.1 Runella defluvii strain DSM 17976 Ga0373287_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 365279 30 100.0 35 .............................. TCTATGGGTGTAAGTTATTGCTAGATAAATCAAAT 365344 30 100.0 36 .............................. GTATTCGTATCCTTACACTGACCCGTCATCGGGACA 365410 30 100.0 37 .............................. CAAAAAATAAACTTACCTTACTTACTAAAATAGGTAC 365477 30 100.0 35 .............................. TCTGCATCCCCCCGCCCGCAATATCTGTAATAGTA 365542 30 100.0 35 .............................. TCATTTTCGGCCTTTGCACGTTCCACCGTAAACGC 365607 30 100.0 37 .............................. CAAGGTGAGCGTACCACTTTTGTTTTTCTTGAAATAG 365674 30 100.0 37 .............................. TTTTGGAAACATCGGTATCAAGAAAAAAGCCCTGCTT 365741 30 100.0 35 .............................. TTGCGAAAAATGGGTTTAACGTCCGATAAAGAAAA 365806 30 100.0 37 .............................. AACAGCACAACCGTAATGCCATTGCTTGTACAAATAC 365873 30 100.0 35 .............................. TTTTCTTAAATTTTATTGCACAATTAAAGTGCCTG 365938 30 100.0 35 .............................. TAAAGCGTTTAGAGGCTGTATCAAAATAGGTTTGG 366003 30 100.0 36 .............................. CATTTTTCGATTGTTAAGCGCTCTATTTTAACGCCT 366069 30 100.0 35 .............................. CTTGACCAAACTAGCCTATCATTCCAGATACGCAT 366134 30 100.0 36 .............................. CGTCCTGCGGTGGTATCTTTCCAATCTCGTTTGATT 366200 30 100.0 34 .............................. AATGTCAGGCGTATAAAATTTAAACTCTATGCTA 366264 30 100.0 38 .............................. ATGTTATAGACCCCTCGAAGGTAATACCACCAGCGCCA 366332 30 100.0 36 .............................. TGAAAAAACAAAGACATGGGATGGAATGGGGCGTTT 366398 30 100.0 35 .............................. ACGAAGTTCATTACTACGAAGGACGAACTTGGACA 366463 30 100.0 37 .............................. GCGTAAATCCGTTCCAGTGTCTTTTCTACCAAAGGTG 366530 30 100.0 37 .............................. TAAACCTGGCGTACTCTCGGCCTTCATCGTCTGCGAA 366597 30 100.0 37 .............................. TGAACACGCACCCTAACTTCATTGACGCTTCACGTAG 366664 30 100.0 36 .............................. ATTTGACGGTGGGGAGGTGCAGTGTTTTGATTTGGA 366730 30 100.0 36 .............................. CAGTAAACTTGGTAGAGTCTGTATCAAAACAAATTA 366796 30 100.0 37 .............................. ACAGGTTTTGAAATCTTTGGAGGCGGCAAATGAAAAG 366863 30 100.0 35 .............................. ATTTTCCCAAGGATAAAACCAAAAAACGTTGTACT 366928 30 100.0 36 .............................. AAAATTCTGTTGTGGTTATCTCCGTACCAATCAGTT 366994 30 100.0 37 .............................. TGTATCGAATGTTTAAGGACGTGGCAGAGATGGAGGG 367061 30 100.0 35 .............................. GCATCTTGCTTACCTACGAGCGGCACTTTGATAAT 367126 30 100.0 36 .............................. TTTTGATTGACTTGTTGTGCATTTAATCCGTACTTT 367192 30 100.0 34 .............................. AGTACTTTTTCCGCTTTTTCGCGGGATGGATCGA 367256 30 100.0 37 .............................. CATAGCATCGTCGTTGGCATCGGCACACAACTGCTTA 367323 30 100.0 35 .............................. TTTCGAAAATGGTTGAGAAATACGGGCATTTGCTG 367388 30 100.0 36 .............................. ATTACGTAAATAACCATTACCAAAATGAACATTAAC 367454 30 100.0 35 .............................. AGATTCAATCGGAAGGTATGGCCTCGGAACGTGGC 367519 30 100.0 36 .............................. CAAGCGCAACGAACGCCGCCACGTCTGCTACAACAG 367585 30 100.0 36 .............................. TCAAAATCATGTCATTAACTCAAAAAGATTTTTTTA 367651 30 100.0 36 .............................. ACAAAGTGAATCTAGGTAAGGCGGCAGAAAAGTACA 367717 30 100.0 37 .............................. TATTAAGGGGCGGTTAGTGCTTGTAGTTGGGAGTCAC 367784 30 100.0 34 .............................. ATCAGAAGAGACGATGATAACAAGCTACCATCAT 367848 30 100.0 35 .............................. AAAGGATGAATAAATAGGTGTTATCTTGCTTTTTC 367913 30 100.0 35 .............................. CTTTTAAACAATCTTTCAACCTCAATTTTTACAAC 367978 30 100.0 35 .............................. TTTGGCGGTAATCATCACCATGCTTCCGCCTAAGG 368043 30 100.0 36 .............................. ATACGTGGACTCCACAAATGATTAATCAAACTGACA 368109 30 100.0 35 .............................. AGAGGAGCATACAAACCCGTATGGTTGCCCCAACC 368174 30 100.0 36 .............................. TACACATTGACGCTGTTATTGACATTTTGAGTCCCT 368240 30 100.0 35 .............................. TTGCTGGAGGCGATTTCAATGACATATACACGGTT 368305 30 100.0 37 .............................. AATTCCGTTAAAGGTGTTCTGACTTCTCGGTACTGAG 368372 30 100.0 37 .............................. ATTATACGCCTTCAAGCGATGAATTATTTGTAACAAA 368439 30 100.0 35 .............................. CCGCTTACGATGTTTAAGTCTTCGTTTGTGAGCGT 368504 30 100.0 36 .............................. GTGCAATCGCAATGGGGAATTTGTGCGAAAGTACAA 368570 30 100.0 36 .............................. TTGTTGGGAGTGGTTTAAAGTGTGAGTTTTACAGTT 368636 30 100.0 37 .............................. TTTGGTTGTACTCTTGTTCCTGCTGTGCATTTTTGAA 368703 30 100.0 36 .............................. GCACGAAGTTTTCACCGCTGAGCATCAAAATATTTT 368769 30 100.0 36 .............................. TTCGTGATAAGATTGTACTGTCAGCCTTTCCAGCAT 368835 30 100.0 36 .............................. ATCATCTAATTTATCATCATACTTTATTCCTATAGA 368901 30 100.0 35 .............................. GGAGCATATATTTTTACAGATATTAAAGATAAAAA 368966 30 100.0 36 .............................. AACGCAATCAAGTCGCTGGTTCACGCTGCATTATAA 369032 30 100.0 37 .............................. GTGTGGCGGTAAGTTCTTCTTTCGTTACACCTATAGC 369099 30 100.0 37 .............................. GTTAAAAACGAAGAATTTACCGATCCCAAATACGAGC 369166 30 100.0 34 .............................. AAGTCAAGCCCTAAGAAAGATGGATACGGCAAAG 369230 30 100.0 36 .............................. GATAGGGTAGTGGATTTAGTTTTTCAGAACTCAAGA 369296 30 100.0 35 .............................. GAAATGGGCACCGCTTTTCTACCAAACTTTTGGGA 369361 30 100.0 35 .............................. GAACAAGACAAAGAGGATGGATATTTTTTGCCCTT 369426 30 100.0 35 .............................. AACGCGGGAAAATTTGGGCATCGCCCAGCCTGGAA 369491 30 100.0 36 .............................. TTGCGAACTTCATTTCGGCGGGTGGCACGGTTGACC 369557 30 100.0 35 .............................. TAGACAATTATTTGCATGAAATCTGCAGCGTAGTT 369622 30 100.0 37 .............................. GCCAAAGTTTTATCAGATGGGATAATTTTGGTTGGAA 369689 30 100.0 37 .............................. AAAAAAAGGAAACAAAGAACCTGTACAGCAGTGCCAT 369756 30 100.0 34 .............................. ACGAATACCGTCGCGGCGGCGCTACCAAGGCCGA 369820 30 100.0 35 .............................. TTTGCAGCTTGAAATCTACTTTCGTGGCGTTGCTT 369885 30 100.0 37 .............................. GTTGCATTGCCTAGTGCAATCGCCTGCGCACTCGCCG 369952 30 100.0 37 .............................. ATAAGTACAACTAGCTCATCGAACCGATTACGGAGTC 370019 30 100.0 34 .............................. TCAACGCCCTGGCTTCTTTCTTTCCAGTCTTGAT 370083 30 100.0 38 .............................. CGCTCAAACGCCAACTGATTTTGCTGTGCTACCAACTT 370151 30 100.0 36 .............................. TTGAATATGACTTTGGAGCGCACCCAGCATAAGTTT 370217 30 100.0 36 .............................. TGTTTTTGGCGACGCTACGGGCTTCGTAGAAGATAA 370283 30 100.0 36 .............................. ACGATAGGGGGAGCCATATACACGCCAAATGTGTAG 370349 30 100.0 38 .............................. CCACCTCCGCCAGCATCACCAGCGTAGAGCTAGTGAGC 370417 30 100.0 37 .............................. AGATGGCAATAAAGCGACTCGTTATGCGCAGCCCAAA 370484 30 100.0 35 .............................. TAAATAAATGTACTCCTCCAGTGCCATTTATCGCT 370549 30 100.0 37 .............................. TAGGTTATATTACGAGACTCAACAACTCCTCCCTCTT 370616 30 100.0 34 .............................. AAAGCTCGCTGATCTGCCTAGCGACGACTCAAAA 370680 30 100.0 37 .............................. CAGAAAAGAGCGGATTTTGAGCTACGTAACTACGCGT 370747 30 100.0 35 .............................. TAAAATAAGCTATTGTCTTCCAAAGCCATACTTTA 370812 30 100.0 38 .............................. GCAGCTTGCCGACAGCGACCCCAAGGCACTAGCCGCTA 370880 30 93.3 0 ............................GA | ========== ====== ====== ====== ============================== ====================================== ================== 86 30 99.9 36 CTTTAAATCGTACCATTTTGGAATTGAAAC # Left flank : CTGTCTCTCCCCAGTAGGGAGGGGAAAGCGCTATGTATGTAATATTGGTGTATGATATTGGAGAAAAACGAGTGGCAAAGATGTTGAAACACTGCCGCAAGTACCTGAACTGGATTCAAAATTCGGTGTTTGAAGGAGAAATCACGGAGGCGAAGTTGAAAGAAATGTTGATGGGTGCGCGGGCGATTATGAATGAGGACCAAGACAGCGTCATCCTATTTAAGAGTCGGAACGAGCGGTGGCTCGACAAAGAAATTATTGGGGTAGAACGAAGTTCCATTGATAACTTTCTTTGAGGGCAAAGTCGTCGAAGTCGGAAAACGGCTCAAAAGTTCGTTGACATATTGACTATAAAAACCCTTGAAGTTGACGTAAGTGTTTGATAATGAGCAGTCGTCGATGGTCTAGTAAAATCGAGTCATTGGCCATCGACGATTTTTCAGTTGAAAAATACCGCAAAAAACCTTAAAATTGAGCCAAAATAGCCGTTTTTCCAACGG # Right flank : AGCAGTTTGATTTGAGAAGAGGAGGCTGGTTAGAAAAACAAAAAGTGCCCTAAAATAAATTTAAGGCACTTTTGCGATGGGAACTGTTGTTTGAGTGACCCCGTTAGGATTCGAACCTAAGACCGACAGATTAGAAATCTGTTGCTCTATCCAGCTGAGCTACGGGACCTGTTCTTGTCGAACGCGGGTGCAAAAATAAATGTTTTTGCGACTTTTAACAACATTCTCCCCAAAAATTGTGTATCCCTCCCGAATCTGCCTATTTTTGTGACTTACTAAAGACCCACAAACCAACTATTTAGCGTGTATTTGTATTCAGAAAAAATTGTCGAGGACTTTCAACAAATTTTTGGAAAAACTCCTTCTTTCGTCGTGCGTGCTCCTGGTCGCATCAATCTTATTGGCGAACATACCGATTATAACAATGGGTTTGTGCTGCCCGCGGCTATCGACAAAGCGATTTACTTCGCCATCGCCCCCCGCACCGACCGACTTTGTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAATCGTACCATTTTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 34803-34542 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIBY010000031.1 Runella defluvii strain DSM 17976 Ga0373287_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 34802 37 100.0 36 ..................................... TGAATTCAATTTTGGTCGATAAGTCTAGGGCATATC 34729 37 100.0 37 ..................................... AAGACCTAGAAGATGCTATAAAAAAATGCTACGACCA 34655 37 94.6 40 ..................G.....T............ AAGATTGGGGTGTATCACTCAAGGGAGGCAACGACGAAAT 34578 37 73.0 0 ........A.........G.....T...TG.GCTGG. | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 91.9 38 CTTCCAGAGCAATTTCCAACAGAACAAGGATTGAAAC # Left flank : TTAAATATCAAGATGTTATCAAACTATTTGAACGCGCTTTTGAACATATAACTATTCCTGAGAAATTTTATGTTAGATGTGATAATGGGTCACAGTTTATAGCAGATATGGTACAGAAGTATTTCAAAGACAAAAAGGTCATTCAAGAGTTTACTAAGCCTGCTACTCCGCAGCAAAATAGCCATATCGACCGGGTCGCCGGAGCGATCGTATCATTCCATCATGGAAAATGCTGTTTGTCAAAGGTTTCAGTTTAGAGATTTAAAAGATGCAAAGCAAACTATGAATCAATTTAGAGAATTCTATAATTTTGACAGGATTCACGGAGGAGTTGGCTTTCAAAGTCCATCCGAATTCTTGCAGTCAAAGGGCTTGGATATGAAAAGTAGCCCTATTAATCAAATCCCTATTCACTAAAATAAGGGAAAGCCAGTGTCCAGTATTTTGCGGTCAGCACAAAACAAGTTGTATAGCACTATGCCTAGCAATAAGCAACAAGC # Right flank : AGATAAAAACTGTCCAAACAAACCCCCGTTTAATTATACTCCTAACCGCCGTCATTTACCACCCCTCAAATTCGCCAACTTTAACCCTAAAAAGTCAACTATTGTTGTATAAGTATCAAAGTATAATTATCTTTAAAAATCAATCACATTACTTATACAATTCATGAAAATTGGTTACGCCCGCATCAGTACCAAAGACCAGTCACTACACCTGCAAACCGATGCCCTGCAAAAAGTAGGCTGTGAACAGGTTTTTACCGAAACAGCCTCAGGCGCCAAATCCGACCGACCCGAACTTCTCAAACTACTTGACTTCGTCAGAAATGGAGACATTGTCGTGGTGTATAAACTCGACCGACTTGGACGCTCCCTCAAACACCTACTCGAAGTCGTGGCATTGCTCAACCAAAAAGGCGTCGGCTTGTTTTCCATTAACGATGCCATCGACACCACTACGCCACAGGGTAGACTGTTCTTCAACATCTCAGCTAGTTTCGCCG # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:0, 3:3, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAGAGCAATTTCCAACAGAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //