Array 1 598398-598975 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOAA010000019.1 Escherichia coli strain D96_9 Contig_19_38.8476, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 598398 29 100.0 32 ............................. TCTGGGCCGGATTCGATCCCGCGCGTACCGGA 598459 29 100.0 32 ............................. TACAATCCCGCATCGAAACTGAATACCCCGAT 598520 29 100.0 32 ............................. TTGCCCAGGCTTTTGCGAAAATTTGTGATTTG 598581 29 100.0 32 ............................. ACACGGGGCAGATTGAGCAGGACTGCGACCTC 598642 29 100.0 32 ............................. GCAGCAGATTTACAAACAGATCGGAGATTACT 598703 29 100.0 32 ............................. CGCGGCCTGCGCTCGCGTAAAATCAGTTGCAG 598764 29 100.0 32 ............................. TCCGCGCAAGCCTATATAAACCAGATTGATCA 598825 29 100.0 32 ............................. CGAAATCGCACGCGCTTCCCGCATGGGGGAAA 598886 29 100.0 32 ............................. TGTAAAAGTCTTGGTTTTGGCGCATCATTTGT 598947 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAGTAGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 624678-625743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOAA010000019.1 Escherichia coli strain D96_9 Contig_19_38.8476, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 624678 29 100.0 32 ............................. ATGATCCAGCGCGGCGGCTCATATGAAACTGG 624739 29 100.0 32 ............................. TGCGTGTCGGGCTGATTCGTCAGCTTCTTGGT 624800 29 100.0 32 ............................. AACGACGCACAGGATATAATGCTTGGCCTGGG 624861 29 100.0 32 ............................. TGACCGCCGATACGTTTGCTGGCGCGGCAGAA 624922 29 100.0 32 ............................. GTTACCGCGACTCATGCGACGATAAAAAATAC 624983 29 100.0 32 ............................. GTGCCGCGACTCACCAGATAGAAATAACGCAA 625044 29 100.0 32 ............................. GCTACCCCATTTGCACGCTGAGTTTGATTTCT 625105 29 100.0 32 ............................. GAGTAACCACGGTGGCAAAAATATCAGGGGTG 625166 29 100.0 32 ............................. CCACATCCAGCATTTGCTGAGGTGAAATCCAG 625227 29 100.0 32 ............................. TTAACTTCCTGCGTCTGCTTGGGGGAATGGCC 625288 29 100.0 32 ............................. TTAGCGTGTGATTTTCCGTGTTATAGGTTAGC 625349 29 100.0 32 ............................. GCGGGATTGTTCCGTTTGCCCGCGCCACCAGC 625410 29 100.0 32 ............................. GGGCCGACGGTCGCAGTGCTGGACCATTTCAA 625471 29 100.0 32 ............................. AAGGGGACGGCTACGGGACGCCGCCTATTGAC 625532 29 93.1 32 ............T......A......... GAAATAGCTTTTGCTGATCATCACGGTTTAAC 625593 29 100.0 32 ............................. TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA 625654 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 625715 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 446-1013 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOAA010000101.1 Escherichia coli strain D96_9 Contig_101_17.501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 446 28 100.0 32 ............................ ATGAAACCAGGGCGGCGACCGCTGGCGCCCGG 506 28 100.0 32 ............................ GCTTCATGACTTCACATCACACGGCGCTGACA 566 28 100.0 32 ............................ AGATACGAAATCAGTACCCCACCACCGTACAC 626 28 100.0 32 ............................ ACATACACAATCCCTGTGGGGATTAATTCTGG 686 28 96.4 32 ............G............... TACATCGCTGAGATTGCCAAGAATACCCCAAG 746 28 96.4 32 ............G............... TGTGACACTAACTTCACAGCGCAACACCTCTC 806 28 96.4 32 ............G............... TCTATAACCTGGAAGAAGGATTCGCAGTGGTT 866 28 96.4 32 ..G......................... AACATTCGGCGAGTGTTCTGATGAATGGGTCT 926 28 96.4 32 ..G......................... GGGCCGCCCCTTTCCACTTCTTCATCAGCGAT 986 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTGTGGATTGTCGGGAATTTGCGACGCTTTAACGCGCAAGGGCGCGTGCCAACCAATCGCACGACCCTGCAAATTATTCGCAATGACAGCGAACATCGTTGGCAGAGTGCGGAAAGTATCGCCCTGCTGGCGGCGATCGCCGGGCTGTTTCATGATTTTGGTAAAGCGGGGATGTGCTTCCAGCAGACGCTTAAGGGAGAAAGCAAGCATATTTGTCAGCCGTACCGTCACGAATGGATCTCGGTTCGTCTGTTTGAGGCCTTTGTCGGGGAGCAATCCGATGCGCAGTGGCTGACATCGTTGACACGGCTTAACGTTGCTGACGAAAAGGCCATGCTGAAAGCGCTGAAGATGGACACAGACAAGAACTGCAGCCTTTTGGGAAATCTCCCGCCTCTGGCGAAAGTGGTGGTATGGCTGATATTGTCGCATCACCGTTTACGGAG # Right flank : TATCGTGCTGACTTTGAGGATTTGCCGACCATGTGCACTGCCGTACAGGCA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36-723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOAA010000085.1 Escherichia coli strain D96_9 Contig_85_21.6778, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36 28 100.0 32 ............................ GTTAAAGAGCCTTACTATGGCAACGTAGCTAC 96 28 100.0 32 ............................ GGCTGCGGGTCAACCTGCTGTTGTTAAGCATA 156 28 100.0 32 ............................ CTGGCACGGTGATCGGCTTTGGCTCCCGTAAA 216 28 100.0 32 ............................ CCGAAATTTACCGAGGCGTTAAACTGCTGAGT 276 28 100.0 32 ............................ AGTCGCAAAAGACGCGCTCGTTCTCTGGAGTG 336 28 100.0 32 ............................ TGTTGTGTCATCACGACCTTGAGCATAAAAGT 396 28 100.0 32 ............................ AGATTGCGAAATGCATCGCGGAAACGTGGGTT 456 28 100.0 32 ............................ TGAAGATGGGCTATGCAGGGGAAAAGGGATCA 516 28 100.0 32 ............................ AGAAACAGTCGTCATAAGTGCGGCCGAGCCAG 576 28 96.4 32 .........T.................. GACAGCCAGGTAACGAACGCCACCAATGATAT 636 28 92.9 32 A..............T............ ATCGAAACGAAGCATCGACAACTGAGCGAAGT 696 28 71.4 0 ...........C.........ACCTCTC | ========== ====== ====== ====== ============================ ================================ ================== 12 28 96.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTAATAACAATAAGATAGCGCTGTTTTCTTCCAG # Right flank : CAAACCAACCCACTGTAATATTCACCAAACCTATTTAAAACCTTATACCATCCAATCTGCACTCTCTATTTTCACAATAGATAAAAAACCTATTCACGCATAAATTATATTCCAGCAAATATATTATTCGTAAAAATAATATATTGTCATGAAAACATGATTTCCCACTTTATTACCACGATGATTATTATTCATTTGATGTCCGTCACATTTGTTTTCATTCGTTCTTCGCTAACATACTGTGCATTCAACACCTTGAAATAAAAGCCCTTGCCATGTCCGTAAACAGCATCACCCCTACAGACTTAAAAACCATTCTGCATTCAAAGCGTGCCAATATTTATTACCTGGAAAAATGCCGCATTCAGGTGAATGGTGGCCGTGTTGAATATGTTACCCAGGAAGGAAAAGAGTCGTTTTACTGGAATATTCCTATCGCTAATACTACGGCGGTGATGCTGGGAATGGGAACCTCCGTTACACAAATGGCAATGCGGGAG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 320024-320229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOAA010000123.1 Escherichia coli strain D96_9 Contig_123_38.414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 320024 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 320084 28 100.0 32 ............................ GCTGTATTCGGCAAATGAAGTGGATGTTGATG 320144 28 96.4 32 ..................T......... TTCGTACTTAACGAACTGTTGCTCCTCTGCTG 320204 26 82.1 0 ........T..A........-A..-... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGTTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACAGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTATGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTGAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTGTAGGCTGGGGCGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAATGGTGCTGGAAGGTAAGAATAAAAAAGGGTGCCAGCAGGAAAATGAGATGATTTTGCTTTATTAACAACGAGCTAAACGTGTAGTATTTGA # Right flank : ATGCGAAAAAAGCTCGTACTTTCGTACGCGCTTTTCTTTAAATATGACGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCACTCACTGTGTTCGTGGTCTGTCCAACTGGCTGCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCTGGAGTGCAATATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTGAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTATGGATTTATACTTCCAAAGTACTTCATACATATCACAAAAT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //