Array 1 338253-338400 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOLW01000002.1 Pragia fontium DSM 5563 = ATCC 49100 strain DSM 5563, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 338253 28 100.0 32 ............................ AAAGCGGTCGGAGTCAGCATTAACACGCTCTA 338313 28 100.0 32 ............................ ATAACGGGTGCTCTACGGGTGCTCTAACGGGT 338373 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 CTGAACCGCCGTATAGGCGGCTTAGAAA # Left flank : GTATGCGGCATTTGTGCGTAAACATAGCAAAAGCCCCAGAGATATTGATAGAAAACGTCAATATTTGCTTAAAAAAGCCGGTGGTGAATGGAATGATATGGCCGAGAAAAGCCTGAGTCGTTTTATTGAGAAGTTACGCTGTCAATTGCCGTTTATCCATCTGGTTAGCCATAGTTCTAAACCGGCAGAAGACGGGGGAAAAAATTATTTCCACCTGTTTATCAACAAAGAGACTGGCGAAGTGCAGCAAGGAAAGCTGACGAAATATGGGTTAAGCGATGCGCAACATCGGACAACGGTTCCTATTTTTTGACCGAATAAATTGATGTTCTTTAAAAAAATAGCGTTAACTTAAATAAACCCTTTTTTTAGCGATGTATTTTCGTTTTATATAAAACAATAAGTTACGATGACCGCTGAAAAAAGGGTATTTTGACTTAATTTCGGATAGATGTCTGATATTATCGGGGCTGTAGAGGGATTTATTGGTAAAATTTCTA # Right flank : AATACGGGCGCTGTAATCTATTTGCCATGTTTCCTGAACTGCCGCATAGGCAGTCCAACCCACAGTCATAAAACCAGCAACTCTTTTTATCTTTCCTTTATGTAAATCACCGGGTTTTTCGCTACATTGACGACGGCTTTTGGCTTTAATCCCTTATTTATCGTCATCTCAGCATCAGATCGCACCTTGATCCACCGCATTTATTTTCCGTGCTGTTATACTTAATTCATTCACCTGACAGGAAAGTCAGTGTCGGTGTATCAGGATAGATATCAGACTATTTGATTTATTGAGGGAGAAAAAATGAAGTCGTTCATTCTTAAAAGTATTGGTGCCGCCTGTATTGCGTTAAGTATGGCAGGATGTGCCTCTAATATTTCTTCAGATTCTTATTCTGATCAGCAGGTTGGTCAGGCTAGTCGTACCTTTGCCGGAACTATTGTTAGTTCCCGAGTGGTTAACGTGGAAGGTAACAACGAGGTTGGTGGGCTGGTGGGGTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACCGCCGTATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 58265-60275 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOLW01000015.1 Pragia fontium DSM 5563 = ATCC 49100 strain DSM 5563, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58265 28 100.0 33 ............................ TGTCAGCTCTGATAACTGGGCGTTTCCAACCCA 58326 28 100.0 32 ............................ AACAGGACAAATTATTACAGATGATGGACGCA 58386 28 100.0 32 ............................ GCACATCACCAATCCACCGCCATTACTAAGTC 58446 28 100.0 32 ............................ GACTAAATTCCGAATTATCGACACTGAAACCT 58506 28 100.0 32 ............................ GCTACGTGCCGCGATGATAGTCTTCCTGATGA 58566 28 100.0 32 ............................ TTGATAGAAATGCCGGTGCGGTTCTGAAAAGA 58626 28 100.0 32 ............................ TAAATTTCATGCCTCGCCTTTGCGGGGCTTTT 58686 28 100.0 32 ............................ TTAAGAACGTCAACGACCTCTTTACCGTAACC 58746 28 96.4 32 ...............A............ TTGGGAAAGCGTAGTAACAGGGCTATACAATA 58806 28 100.0 32 ............................ AAACAGTGTCTTTAAGCAACGTGTTAACGCGC 58866 28 100.0 32 ............................ ACGACCGGAACTCTTCCACATTTTCTAACATT 58926 28 100.0 32 ............................ ATTATGAGGATCGACATAACGAACATGGATTG 58986 28 100.0 32 ............................ CAACGGAATATTTGCTGACGATTGTTATAAAT 59046 28 100.0 32 ............................ ATATTGCGACCGGCTATCTTACCGACTGTTTT 59106 28 100.0 32 ............................ GCACTTAACTCAACGTTCTTAGCATCATCAGC 59166 28 96.4 32 .........T.................. TAAATGTTCCCAATACTCACCTAAAGGGAAAT 59226 28 100.0 32 ............................ GACCGCCCCAACTGCCACCTAAATGTTCCCAA 59286 28 100.0 32 ............................ GGTATAAGCATCCCGATCAGCAATACGAAAAT 59346 28 100.0 32 ............................ AATACACTCTTGAACGGTTAGCCAAATATCCA 59406 28 100.0 33 ............................ GAAGCCAACGGCATCGATACAACGAGCCTCAGA 59467 28 100.0 32 ............................ CACATGGGGCAACAAGTCTTTCTCACTCTCTC 59527 28 100.0 33 ............................ GAAGCCAACGGCATCGATACAACGAGCCTCAGA 59588 28 100.0 32 ............................ CACATGGGGCAACAAGTCTTTCTCACTCTCTC 59648 28 100.0 32 ............................ GACTGAAGTTAAACAATGCGCGTCCTCTGTGA 59708 28 100.0 32 ............................ TTTATAGATATGTGGGATCGTTAATGAAAACA 59768 28 100.0 32 ............................ GCTCAGAAATTCTACGTAATGCCGATGGCTCA 59828 28 100.0 32 ............................ TATAAGCCGCAATTACAGGAAGGCTCTGGCCG 59888 28 100.0 32 ............................ GACCAAAGTACCTCTAACGGATGCAGGAACGG 59948 28 100.0 32 ............................ CGTGAGCATATCGAATATATCCAAAATTATAT 60008 28 100.0 32 ............................ AATACAGACTGGGGCCGGCCTTATTTACCCCG 60068 28 96.4 32 C........................... TCATCGAAAGCAACCTACCGCCTCGAACCGCT 60128 28 100.0 32 ............................ TGAGTCGTAAGGGCAGAAAAATAACGAGCCCT 60188 28 100.0 32 ............................ CAGCAACAAACGCTTCTGCAATTCGCAAAATA 60248 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAA # Right flank : AGGTATGAAATCAAACTATTCATCATCTACGCAGCATTGCGACAATATGTATCGTTTACAGTTAATCTCGAGAGTATTGGCGGCAAAGAGCCGCCATGCATCAACAATAATTGTTAGGAAGGGAATGTTAAGAAAGGTATTTGTAGTTTGAATCGTCCCCGTACCTCATATCGTACCCATCCCAATTTCTTCTACTTTAAATTATCGGTGATAAGCCTTATTTAATGCGCTCTAGAAGTACACCCGATTCCATATGATGGGTATAAGGGAATTGGTCAAATAACGCCAGTCGACTCACCCGATGAGTTTGGTTGAGGACAGTCAGATTTTCACATAGGGTTTCCGGATTACAGGAAATATAAAGAATTCTTGGGTAATCCTGAACCATGGTGACCGTTTGCGGATCGAGGCCGCTACGCGGCGGATCGACAAAAATGGTTTCGCACTGGTAGCTGGTTAAATCAATGCCTTTTAGTCGATTAAATTCCCTGACACCTTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //