Array 1 173509-172280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGE010000008.1 Pectobacterium atrosepticum strain A597-S4-A17 A597_(paired)_trimmed_(paired)_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 173508 28 100.0 32 ............................ ACCCGCAATTTGACAGACGAGCAACGCAAGCT 173448 28 100.0 32 ............................ AGCATCACGTCGTGGGTCAAATACTGCGACAG 173388 28 100.0 32 ............................ ATCGTTACACGGCACATAGATTGCGTCCGTAA 173328 28 100.0 32 ............................ GTGTGGGCCAGCCGTACAGGTGATTACAAAGA 173268 28 100.0 32 ............................ GGAAAGTTGATCTACACCGACGAGCCTAACGC 173208 28 100.0 32 ............................ AGCGTAGACGCGAACTCATGCGCGAATTGCTC 173148 28 100.0 32 ............................ TGTTGAGCTAACTGGTAGTTGCTGCGGTCTGG 173088 28 96.4 32 ...........C................ GATCTACCAGCCTCAGACACATTAGCCCCCGC 173028 28 92.9 32 ..........AC................ TGGCACGGATACATCCACTTCACTGACGCGCC 172968 28 96.4 32 .........A.................. AGTGTAGTGATATAGATTGGCCGGCTCATTCA 172908 28 100.0 32 ............................ CGGTGATGAGTGCCTGATTATCTTTGCCGATC 172848 28 100.0 32 ............................ TGAACTAACACGCCATAAGCAATATCAAGCGT 172788 28 100.0 32 ............................ TGTCGCCATAACCACCTGTAATACAGGCTCGG 172728 28 100.0 32 ............................ ACAGATAATTGATAGAGAGACGTCAATTAATG 172668 28 100.0 32 ............................ GTCACATCGTCGTCCCTTCCGAGGACTATGGA 172608 28 96.4 32 ...........C................ GTATCCAGTGACCGACGAATCAGCGCTCGACA 172548 28 96.4 32 ...........C................ TGCGCATTGTGGACAAAATCGCGCGGCGTGTT 172488 28 96.4 32 ...........C................ TCGATAAGGTCTGGGAGCGTATCCGAGTATCG 172428 28 100.0 32 ............................ GTTTACGATTCTGCTCACGTCACTAATTTCAA 172368 28 96.4 33 .................T.......... CACGCGAGATCGCTGTTCAGGCCGAGGCAACCC 172307 28 85.7 0 .....................C..TTC. | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCTTAGAAAGCACATATCATCGCACGCATCCAAATGCGATGGTTCACTGCCGTACAGGCAGCTTAGAAATGGCGACACAGGAGATTGCCAGCCAGTCAGGGGTTCACTGCCGTACAGGCAGCTTAGAAAGCAGAGACTATCGATACGGTCTGGACGGATGCGTTCACTGCCGTACAGGCAGCTTAGAAATGTGTCGGATCGGCGTCGGCGTTGCCGTCAGGGTTCACTGCCGTACAGGCANNNNNNNNNNNNNNNNNNNNNNCCGTACAGGCAGCTTAGAAACTCGGCATACGCCAGTTGGGGAATAACAGAGTGTTCACTGCCGTACAGGCAGCTTAGAAAGCGAATCGTACAGTGGCCAGCGAGCGACGGTTGTTCACTGCCGTACAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTACAGGCAGCTTAGAAAGTTTGCAGGGTCAGACCACGACACCATCGCCT # Right flank : CAGCACTCAGGCACTGCTGTCTGGTTATTATCGAGGTAGCACTGCGCCAGCGCTCAATGCGCTGTAGCTCTTAAATAACGTATTGTTGATGGCTTATTTTCGTAATATTTTCAAGTAACGGGTATCTTTGGGTGGGAATGGAAAATTGCAGATTGAATGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCACTTACAGGGAAATAGTTTGTTGACTTAAGTAAAATTCGAGGGAATGAGGCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 174328-173667 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGE010000008.1 Pectobacterium atrosepticum strain A597-S4-A17 A597_(paired)_trimmed_(paired)_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================= ================== 174327 28 100.0 32 ............................ AGTCCGTCACGAACTTCAAAACGTTTAGCCCA 174267 28 100.0 32 ............................ AGCCTGGAAGACATCGCCGGTCAATCGGGGCG 174207 28 100.0 32 ............................ ATTTCCTTTTTCAGTGCATCCGTGCGGATTTT 174147 28 100.0 32 ............................ CCGATTAGTGAATATCGGTGTCGGCACACCTC 174087 28 100.0 32 ............................ AGATTAATAACGTCACGTTCCCAGGCGAGGTG 174027 28 100.0 32 ............................ GCACATATCATCGCACGCATCCAAATGCGATG 173967 28 100.0 32 ............................ TGGCGACACAGGAGATTGCCAGCCAGTCAGGG 173907 28 100.0 32 ............................ GCAGAGACTATCGATACGGTCTGGACGGATGC 173847 28 100.0 65 ............................ TGTGTCGGATCGGCGTCGGCGTTGCCGTCAGGGTTCACTGCCGTACAGGCANNNNNNNNNNNNNN 173754 28 71.4 32 NNNNNNNN.................... CTCGGCATACGCCAGTTGGGGAATAACAGAGT 173694 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================================= ================== 11 28 97.4 35 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTACCCGTTCCCAACATCACAACACTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTTCCGTAATAGATAATAGCCATGACGCCAGCTTAATAAATCGCAGGCTAACTATTTGATAAGGAAAAATATAATCTTCAGAAAACTGATGAAAATCAGACTATCACAGTTGCATGTGAAAGATGATGACCGCAAAAAATATTACCTAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATAGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : GCGAATCGTACAGTGGCCAGCGAGCGACGGTTGTTCACTGCCGTACAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTACAGGCAGCTTAGAAAGTTTGCAGGGTCAGACCACGACACCATCGCCTGTTCACTGCCGTACAGGCAGCTTAGAAAACCCGCAATTTGACAGACGAGCAACGCAAGCTGTTCACTGCCGTACAGGCAGCTTAGAAAAGCATCACGTCGTGGGTCAAATACTGCGACAGGTTCACTGCCGTACAGGCAGCTTAGAAAATCGTTACACGGCACATAGATTGCGTCCGTAAGTTCACTGCCGTACAGGCAGCTTAGAAAGTGTGGGCCAGCCGTACAGGTGATTACAAAGAGTTCACTGCCGTACAGGCAGCTTAGAAAGGAAAGTTGATCTACACCGACGAGCCTAACGCGTTCACTGCCGTACAGGCAGCTTAGAAAAGCGTAGACGCGAA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 184369-184876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGE010000008.1 Pectobacterium atrosepticum strain A597-S4-A17 A597_(paired)_trimmed_(paired)_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 184369 28 100.0 32 ............................ TGGCTGAATGAGGCCGTGGAGGCTGCGGCTAC 184429 28 100.0 32 ............................ CAGTCGCTACCAAGCGCATTAAGTGCAGGGAC 184489 28 100.0 32 ............................ TGGTCTTCACTCAACCCTTGCGCACTGGCCAC 184549 28 100.0 32 ............................ ACCTGGAAGACGCACTACGCCTGAATCCGCTG 184609 28 100.0 32 ............................ TTGCTTTAACAACCACCGTCTGAACTCACTGT 184669 28 100.0 32 ............................ CAGCCAGCTTATCAGGGGGCCATCAAGCCATC 184729 28 96.4 32 .............C.............. AAGCAAATAGACTCCATATTTGAGCGTAACGG 184789 28 96.4 32 .............C.............. ATCGCAGTGATGAAGATCCCCGCAGCCTCCCC 184849 28 75.0 0 ............GC......T.C..GGC | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAGAAACGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGTAAGCGAATAGCACGATTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCCAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTGCCACAGGGTTGGCACCCTTTTTTCACGGACACTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAAC # Right flank : CTTATCGGGGATACGTTGCTGGTACGACTCGCTTCAAGGGTGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCTAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAACGATTAAAGAAGCTCTCGAAATCCTGCCGTACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGAGCCAGAAT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //