Array 1 348669-350709 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTZ02000001.1 Salmonella enterica subsp. enterica serovar Haifa strain HIY0257 NODE_1_length_576267_cov_27.827502, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 348669 29 100.0 32 ............................. TAAACACATTGACTTTATCGCGATAAGCTATA 348730 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 348791 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 348852 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 348913 29 100.0 32 ............................. GTTGTAGCGAATTGCCCGCTGTATCGTGTCGT 348974 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 349035 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 349096 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 349157 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 349218 29 100.0 32 ............................. GTGGTCCTCAAGTGAGTCTTTGGAAAAACCCA 349279 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 349340 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 349401 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 349462 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 349523 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 349584 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 349645 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 349706 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 349767 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 349828 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 349889 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 349950 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 350011 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 350072 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 350133 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 350194 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 350255 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 350316 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 350377 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 350438 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 350499 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 350560 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 350621 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 350682 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 366969-369057 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTZ02000001.1 Salmonella enterica subsp. enterica serovar Haifa strain HIY0257 NODE_1_length_576267_cov_27.827502, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 366969 29 100.0 33 ............................. TCCCCGAGCTTAGTTAGGTTTCGCTGAACGTGC 367031 29 100.0 33 ............................. GTGCGCGTGGAGCGCCTTAATTCAATTACTGAA 367093 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 367154 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 367215 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 367276 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 367337 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 367398 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 367459 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 367520 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 367581 29 100.0 32 ............................. AAACGGCGCTCGTTTCAGCGGCAACGGCTGTG 367642 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 367704 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 367765 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 367827 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 367888 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 367949 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 368010 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 368071 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 368132 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 368234 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 368295 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 368357 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 368418 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 368479 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 368540 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 368601 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 368662 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 368723 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 368784 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 368845 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 368906 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 368967 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 369028 29 96.6 0 ............T................ | A [369055] ========== ====== ====== ====== ============================= ========================================================================= ================== 34 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //