Array 1 822036-821274 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPDR01000001.1 Streptococcus equinus strain FMD1 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 822035 36 100.0 30 .................................... TCTTTGGAGGCATTGCACTTGTTGGATCTT 821969 36 100.0 30 .................................... TGAAACTTATATGACTGAGAACAAAAAAGT 821903 36 100.0 30 .................................... TGAATGAGACAATAAACCTACCCGACAAGC 821837 36 100.0 30 .................................... AAAATAGCACTTAGAATATTCGTCATTCAT 821771 36 100.0 30 .................................... AAAATACTGCATAAAACTGCCGAAAATCTT 821705 36 100.0 30 .................................... TAAATCGTTGTTAGTAGTTGTTTGTTTTTT 821639 36 100.0 30 .................................... CGTTTCAAGATACTTGATTAAATCTTGTGC 821573 36 100.0 30 .................................... ATCGATATTTATCATTCGGTTGTTTTGATT 821507 36 100.0 30 .................................... CACCACTACCAAATGAAGAGAACACGCCTT 821441 36 100.0 30 .................................... AAAGTTGTTAGCAGTGCCATTTCTGCGGTT 821375 36 100.0 30 .................................... TGTTACGTCTTTCATTGTTTTATCTCCTAT 821309 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCCCTTTGGTTTGGGGAATAAAATAATTAAATAAGGAATCATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : GTTGTAGCTACTAAATATGAATATACCAAAACCCCACCTAGTTTTTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGCGATGAGTTGAGTTTTTATTACCTTTGCTTAAATGATAACGCTTTCTGTAAAATTTGTAAAATGATTTGCGGTAGCTGATTTTAGCGATATTTATCGCGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAATTACACAGCTAAAGATGGTGAAACTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 823340-822638 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPDR01000001.1 Streptococcus equinus strain FMD1 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 823339 36 100.0 30 .................................... AATTTTGGAAAATCAATAGCAACACCCGTC 823273 36 100.0 30 .................................... GGCTTTAAACGGCACGATTGCAACTGGTGT 823207 36 100.0 30 .................................... CTTGTTTACGGAAAAAACATCAAGTCAATT 823141 36 100.0 30 .................................... ATACGAAAACCAAAACCCATTCAATCCTCA 823075 36 100.0 30 .................................... ACTGTCAGCGTAACCTAATACATCAGATTT 823009 36 100.0 30 .................................... TTAAACAAGCCAAAATGTTTAAAGATTTCT 822943 36 100.0 30 .................................... TTGCAAGTGGTCGATAAAGCTATCGTCTCT 822877 36 100.0 30 .................................... CGTTAAGCGGTGCTTTTGGTGTTGCAATAA 822811 36 100.0 30 .................................... TTCAGCTGGTTACGATGCGGACGGCGGTCT 822745 36 100.0 30 .................................... GATTTGAATATTGGTTCGACAATCGTTGAT 822679 36 88.9 0 ....................T...AAA......... | T,AAT,TA [822643,822645,822649] ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTTTCACAAAGAAGAAGGCGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGGAACCGAAGGTAAAGATATCGAGGAAGCTATGAAGAATGCTCGTGAAATGCTTGAGAGTTCGCTAGCTGCGTATCTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGCTAACCGTTGATGATGGTTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAGAATGTTACGGTACCAGAATGGTTGGTCAGATTAGCTGACCGTGAGCAGGTAAATTATTCTGAGGTTTTAACAAAAGCTTTGGAGAAAAAGTTGCAACTATAAGTTTTACGATTGCTCAGGAACGTTGAAAAATCAAGAATTTTGAGGTATAATAAAGCTAATATTATGGAGCTATTCGAGGCTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : TTTAGTGAAAATCACTTTCAATGTTTTTCAAAATTTTTCTTTTATGGTAAAATTGAAAATGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCCCTTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //