Array 1 10429-9292 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB892328.1 Oligella ureolytica DSM 18253 B092DRAFT_scaffold_53.54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================================================================== ================== 10428 32 100.0 34 ................................ CAGCGGATAGAAACAACGCTCACGGCTTTGGCTC 10362 32 100.0 34 ................................ TAGCGGCATTGATCCACAGTCAGCTATGCGGCAT 10296 32 100.0 34 ................................ ATATTTTTACTCATAAAAATTGCACTCCAATTAT 10230 32 100.0 35 ................................ AACACGATCGGTAGGCGCATTGGCGCGATGACGCT 10163 32 100.0 33 ................................ AGAAGATTGTGGGGATACCTTTGCCCGTGTTAC 10098 32 100.0 84 ................................ AATCGCTTTTAAATAAGGGTCCAGTATAGAACGTCAACTACTTTGTCCGGCGCATTGACTCATCATTTTTGCTACTTTCCTTAA 9982 32 93.8 34 ..A.T........................... GGCTGTAGTCTGGATATGTTCAGGCTTGAACTTA T [9978] 9915 32 100.0 34 ................................ TTCACTACATCGTTTGTCTCCATAAAGTGATTTA 9849 32 100.0 33 ................................ ATCTTAGGTGGTTTATTAGCCTTTATTGCTTTC 9784 32 100.0 34 ................................ CTGGCACTCTCGTTTTGTCGGAAAAGATGACGTG 9718 32 100.0 34 ................................ GCAAAGTGCTTTTTGAGCAGCATGGACAATCCGG 9652 32 100.0 33 ................................ AGAAAAAAAACATTGTATCTATTTTTGTTTTGT 9587 32 100.0 34 ................................ TTCACTACATCGTTTGTCTCCATAAAGTGATTTA 9521 32 96.9 34 ...........T.................... AGGTTTAGCGATGTTAGAGCAAGTAACGACCGCA 9455 32 100.0 34 ................................ AGAGCTACCAGATGTTAGGCGTGTAGAGGTTTAC 9389 32 100.0 34 ................................ TTCCGCCAAGCCAGTGCGAGTAATTACATCAACG 9323 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================================================================== ================== 17 32 99.5 37 GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Left flank : CTTACGGTGTTACGGGAAATACCGAGCTCATCACTTATTGCTCTAATGGACTTGCCTTGTTTATGTAATACGTGAATCGTCACGACCATCTCCTGAGTTAACATAAGCGGCCTGAAAAACCGCTAGTTTATTAAACTAGTGGGTCAATATTCAACCGTTGATCATGGGTTATTATTACATTGGTGCCAACAAGGATGTTC # Right flank : TAATTTAGTTAGCTCCTGTCTTCAGCGTTTTTCGGGGTACCCGACTCATCATCTTTTAAATCAATGGTTTAAGCTAAGAACGAGAGTGTCTTAGGGTGTCCTAACGCTGAATACTGGAGCCATGGATTTGCTAATTTCAGCAATCTAATTGCTCAGGCTTGATATTAAGTGCCTTTGCTATTTTTTTCTAGTTGATAATGTAGGGTATAAAGAGTTTTCAAGCTGGAATATGCAGATTGAGAGATGCCTAAGTTTTTGGATGCTTGAGCTTGAGTCATGCCTAGATATTCTCTCCATGCTTTTGCAGGCGTATAGTCTTTGTCAAACATAAGGTCAACTATTTGATTTGGTACGCCATGCTCAAGATTGATGATACTTTGTTGTATTAGTTGTAAGTAGTCCGCATAAGGAAGAACTACATACTCAGGCTCACCCTGTTTTTACGGATTATTTGCTGGTTAGTATGTGCGTTCATCACGTTTTTTTACGTTTGAGCAGTA # Questionable array : NO Score: 8.99 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24682-28129 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB892302.1 Oligella ureolytica DSM 18253 B092DRAFT_scaffold_3.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24682 28 100.0 32 ............................ TATTCTAATAGTAGTAAGTGCTGAAGCTAACC 24742 28 100.0 32 ............................ GAAACGGAAAGTGAGCTCATCGAGTGGGTAAA 24802 28 100.0 32 ............................ AAACGTTTTGTGTATAGCGAGGTTCATGTTCA 24862 28 100.0 32 ............................ TAGTAGTGATACTTTAAGAATCGCCTTTAAAA 24922 28 100.0 32 ............................ TTCAAAAATTGCGATAACTTTACCCTACCTTT 24982 28 100.0 32 ............................ GCATGGCATTTGCATGTACCCCACACCGTAGA 25042 28 100.0 32 ............................ AAAGACATGATTACTGATTTAGAAGCCCTGCA 25102 28 100.0 32 ............................ GCTACCGTCTGCAGCTTCTGATATGCGTCTAG 25162 28 100.0 32 ............................ ATATTGACTTGCCCCTCAGTCGCAAATGTGCG 25222 28 100.0 32 ............................ AACTAACTGGCTATTAACCAAGTATCCAGACG 25282 28 100.0 32 ............................ TTCGGGTGGTTTTTTTGTGTCTATACAAATCA 25342 28 100.0 32 ............................ ACTCGTTGGCGTCTCGCTTAGTCTTAAATCGC 25402 28 100.0 32 ............................ CAGAAGTAAATGGCGAGGAGTTCTTATTCATA 25462 28 100.0 32 ............................ ATCAGAAGCGACCGGTGGCTCAGTGATAACAG 25522 28 100.0 32 ............................ AATCATCACTCGGTCGTCTGCAATGGCTTCTA 25582 28 100.0 32 ............................ ATCAGAAGCGACCGGTGGCTCAGTGATAACAG 25642 28 100.0 32 ............................ AATCATCACTCGGTCGTCTGCAATGGCTTCTA 25702 28 100.0 32 ............................ GAATAATGGCTTAAGCGAATACTCAGGACATG 25762 28 100.0 32 ............................ ATATGAATCAGCACTTACAAGAAAATGTGTGG 25822 28 100.0 32 ............................ TACTCGCCGACATGAATATTTTGTTCTTACCC 25882 28 100.0 32 ............................ ATCATCTCAAAGTCTTCAGCAAGAGCTGCTTC 25942 28 100.0 32 ............................ TAATTTTTAATGAACAAACTAATTAAGTAAAA 26002 28 100.0 32 ............................ TTGATATTACTTTCGTTAATAGCTAGCAGCGA 26062 28 100.0 32 ............................ TGCTTTTGAGGATGAGCTAAGAGCAGCTTTAT 26122 28 100.0 32 ............................ TCAATCGGATCACACGGAGTTAGCGACTGATA 26182 28 100.0 32 ............................ TGCTTTTGAGGATGAGCTAAGAGCAGCTTTAT 26242 28 100.0 32 ............................ TCAATCGGATCACACGGAGTTAGCGACTGATA 26302 28 100.0 32 ............................ TGAAGATTGGAAGCGCTTTGCTCCAATGCGAA 26362 28 100.0 32 ............................ TCTTCAGAAAGTCTGTGGATTTGACTAAACCC 26422 28 100.0 32 ............................ TCCCATCACAAGCAATGTACAGCCCAGTTAAA 26482 28 100.0 32 ............................ TAAATATCATTCCCCAAAAGCAGCTTCCATCG 26542 28 100.0 32 ............................ TGCATCACCAACACCTCCCACTGTCTGCAAAT 26602 28 100.0 32 ............................ TGCAGCTAACACCAAAAGTACCCGCGGCAAAA 26662 28 100.0 32 ............................ AACATGCCTCCTGTAGCAGCCCAGTTTTGTGC 26722 28 100.0 32 ............................ AAGCAAGATGTGCCGGCCGGCACTCCTGTGTC 26782 28 100.0 32 ............................ TGAAAAGATAGTGTGTATCGCTCTCCTGCAAC 26842 28 100.0 32 ............................ TTACTAAGCGACAACCACTAATTCCAAGTGAA 26902 28 100.0 32 ............................ TTACGGTGTACCGGCAATACGAGGGACACATA 26962 28 100.0 32 ............................ GGAACGATGCTGCAAGTAAAATCAGTCGTACC 27022 28 100.0 32 ............................ TGCTGTTGCGTCACTTACGACTGAGTCTCAGC 27082 28 100.0 32 ............................ CGTGGTTGCTATTGATTCTGACGACAACAAAA 27142 28 100.0 32 ............................ TCTAATGCTTGAATAGTGGACTCAAGGCGATA 27202 28 100.0 32 ............................ AGTAGACAGACCAGGCTTGCCCTACGCTAATA 27262 28 100.0 32 ............................ ACGAGGATAATTAGTGCCAACAAGTAAGTTGT 27322 28 100.0 32 ............................ TCTTGAATGATAACTGCATCGCTCGTACCACT 27382 28 100.0 32 ............................ TAACGATTTTAGCGACAGACATGAGCAGCATC 27442 28 100.0 32 ............................ TTTTTTAACGCGCTAGGCGTTGGCGTGGTGGA 27502 28 100.0 32 ............................ GTAAAAAAATTAAACAGTCGTCGCAAGCAGTA 27562 28 100.0 32 ............................ CCTCTAGAAGTGCGTTATTGTGTGTCGATACC 27622 28 100.0 32 ............................ TCATAGCTAGGCCGTTTGCATGTGCTTAAGCG 27682 28 100.0 32 ............................ ATTGGCTTTTAAACTTTTACATTAAAACAACA 27742 28 100.0 32 ............................ ATTTTATTTATTCCTTAAAGGCAGCCTGACGG 27802 28 100.0 32 ............................ ATCTCCCGTAGCAAACTGAAAAGGTACCTCTT 27862 28 100.0 32 ............................ ATTTACATATCTTGCGAATCTTGTTTAAGTTA 27922 28 96.4 32 ......T..................... ATTATTATCAAACCGACCTAAAGCCCAATGCA 27982 28 100.0 32 ............................ AAAGGCGTTATCCGCTTGGAAGCCCTCTAGCT 28042 28 100.0 32 ............................ TTAAACTGATATTAATCAATTATTCAATTGTA 28102 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 58 28 99.9 32 GTTAGCCACCGCACAGGTGGCTTAGAAA # Left flank : GTACCTGAAAAGTCTAATTGTTATTTGTTAGTTAAACGCTACCGAGTTGACATGAATTTAGAGAGTTTAACTCGCAGGTTTATGCAACGAGAAAGTAAAAGAACGGGCAGAGAAATTAGCTTTGAAGAGGCTAGAAGTATACAAAATCAGCGTTTTGCTAAAATTAATAACTTAACCATACAAGAGGCTGAAAAACATTATGAGGAGCCAAATGTAAAGAACTTACCATTCATTAAGTTGAAAAGTTTGAGTTCAGGAGAGGAATACTCTTTGCTAATAGAACAGATTAGCTCTGAGCGACAACGTATTGGTAGCTTTAATACTTATGGGTTAAGTAGTCAAAGCACTGTTCCACACTGGTAGTGTAAAAATACCTTTATTTTTTTCTTTAAAAATTTGGAATAAAAATCAATGAGTTACATTAGGTAGTAATATTTTGGTAAAAAAAGGTTTTATCAATAACTACTTGATGTAGCTTATATTTTTCGGTTATTATTGTT # Right flank : ACCAGTCAGCACTTTGTGTTCGCTGACACAATAGATGTTTTTTAATTGAGTTTATTAGAGTGAAGCTATGGAATGATAGAGTGTAGCTTCTACAGTGATACGCTTATAGAGCAGTTTATCAAAGGAATAATTACGCCTACTAAGCAGTATCCTGCCATTTTAGTACTAAATTGAGCGTCCTATAAATATAACATATCACCGAAGTTATCAACTTTGAGCACAAGATATGTGATGCCAATGCTTTGACTATGGATAAAAAGCTCAGATTACCGTCTTTTAAATAGCAGGCATTGCAAAAGTAAGGCGCTTTTTTTATATTATTCAAGACAGTTCATAAATTAAACTGTTATTTTGTCAATTCTTGACGTGATTAAGCCCAAATTTTAAGGTTCAGAAAACGCCGCATTACGACAATAGCTTGCTCTCAGTCACTAACTAAAATGGAGTATATAAGTGTCTTTTCTACTGGTTTTTCTTGGTGGTGGTTTAGGATCTGTAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGCCACCGCACAGGTGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 8875-10032 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB892331.1 Oligella ureolytica DSM 18253 B092DRAFT_scaffold_56.57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 8875 32 100.0 34 ................................ GGTTTGTGGTTTTTTACCCTTGTAACTACGCATA 8941 32 100.0 35 ................................ GGTAATACCTGGTGGCAATTCCACCCCATTAAATA 9008 32 100.0 34 ................................ ACAGTGGGCTTAGCAGTGTAGTGCAGCTAGGTAT 9074 32 100.0 34 ................................ ATAGCATAGTAAGCAGTACAATATATTTCTTTTT 9140 32 100.0 34 ................................ CGAAAAGCTTACTGACTTTACCCACTCGATGAGC 9206 32 100.0 34 ................................ TTTTACTTGGTCGATTATGGTTTTATTGCTCATT 9272 32 100.0 36 ................................ CTGATAAAAATCGTTTATTGTCAGCTCCTCTAGCAA 9340 32 100.0 35 ................................ CCATTATCAAACACAACCGAAAAGAATCCATGGTC 9407 32 100.0 34 ................................ CCATCTTATCAAAAGCGGTTTTAAAGTCTGAGAA 9473 32 100.0 34 ................................ ATTTTCTTACTCCAGTTTTAGTTAATCATACTCT 9539 32 100.0 34 ................................ GCTTATTCTTTGGTGAGCTATAGAAACGTATGTC 9605 32 100.0 33 ................................ ATACATTATATAGCGTTATAAATAACGAGCAAT 9670 32 100.0 34 ................................ TACTATCGTCATGGAAGTAGTGAGATATATTAAC 9736 32 100.0 34 ................................ TGTCCATGTGAGTCTATTAAAAGGCTCATCTAAG 9802 32 100.0 35 ................................ GAATAAAGTAATAAATTGCGCCTTAGTTAGCTTTG 9869 32 100.0 34 ................................ AATGTCGTAAAACATTATCTTACTCATAATAAAC 9935 32 100.0 34 ................................ CTAGTAATACACCTTCACCGGTGCTACAATCATA 10001 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 100.0 34 GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Left flank : GTTTAGATCCATTTGTTGGACTTTTGCATCAAGATAGACCTGGGCGGCCCAGTTTAGCGCTAGACTTATTAGAGGAATTCAGAGCATTTTGGGCCGACCGCTTAGTCTTAACTGTAATTAACCGTAAGCAAATTCAAGCGAAGGACTTTGTTACTGAGGCGAGTGGTGCTATGTTTTTAAAAGAAGATTCCCGAAAAAAACTACTAACTATTTACCAAGAAAGAAAACAGACTGAAATTATTCACCCGTTCTTACAAGAAAAAGTACCTCTAGGTTTGTTGCCGCATTGCCAAGCAACGTTATTAGCTAGGCATATCCGTGGTGATACTGAGTTTTATCCACCATTTTTGGTGAAATGAGGTTAGCGGTAACGCAACTTACTGATATTTAAATAAAAAATATTCGTTTTATATTTAATAATTAAATCCTTTTAATTAATTCCATTAGGTAGCGGAATTAATTTGGTTTCTCTTTGTTTTTTAACAAGTTATAATAATGCG # Right flank : ATTCCACTCGCTTGAGCAGATGCCTTTGCCTAGCTGTCGCGCCTCACGCAGGCGCGTGGATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.01,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //