Array 1 462558-464293 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDN01000003.1 Salmonella enterica subsp. enterica serovar Muenster strain ARWAII .SLX_12186.D704_D507.HJ72NBBXX.s_1.r.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 462558 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 462619 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 462680 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 462741 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 462802 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 462863 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 462924 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 462985 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 463046 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 463107 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 463168 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 463229 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 463290 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 463351 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 463412 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 463473 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 463534 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 463595 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 463656 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 463717 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 463778 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 463839 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 463900 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 463961 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 464022 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 464083 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 464144 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 464205 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 464266 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGAAAAAGGCGAGATGACCTATAAACAGGCCCAGCAGCGATATGGCATTCAGGGGCGCTCCACCGTACTTGTCTGGCTGCGTAAATATGGCCGGCTTGACTGGAGACCCGGACTTCCTGACCTGGTGAAGAGGAAACTGCCTGTGGCTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 239958-237427 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDN01000008.1 Salmonella enterica subsp. enterica serovar Muenster strain ARWAII .SLX_12186.D704_D507.HJ72NBBXX.s_1.r.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 239957 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 239896 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 239835 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 239774 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 239713 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 239652 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 239591 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 239530 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 239469 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 239408 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 239347 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 239286 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 239224 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 239163 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 239102 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 239041 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 238980 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 238919 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 238858 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 238797 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 238736 29 100.0 32 ............................. GACGATTTTAACGCCGTATCCCGTTCTTATAA 238675 29 100.0 32 ............................. CCGGCCGCGATCGCGTCTTCCAGGGTGATGAC 238614 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 238553 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 238492 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 238431 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 238369 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 238308 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 238247 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 238186 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 238125 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 238064 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 238003 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 237942 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 237881 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 237820 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 237759 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 237698 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 237637 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 237576 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 237515 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 237454 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //