Array 1 94146-93751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDFT010000002.1 Escherichia coli strain 40435 40435-00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94145 29 96.6 32 ...........................T. AATATTTTCCGGCGCGGACCGCCTGCTCAATA 94084 29 100.0 32 ............................. GGCGTCATCATCAAACAGGGCGTCTAACAGCG 94023 29 100.0 32 ............................. ACTATATATTTCCTCAACGAGTAATTTTGAAT 93962 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 93901 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 93840 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 93779 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121339-119846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDFT010000002.1 Escherichia coli strain 40435 40435-00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121338 29 100.0 32 ............................. GCTTGATGGGGCACCAGCCCCGACTGCCAAAG 121277 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 121216 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 121155 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 121094 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 121033 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 120972 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 120911 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 120850 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 120789 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 120728 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 120667 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 120606 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 120545 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 120484 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 120423 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 120362 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 120301 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 120240 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 120179 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 120118 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 120057 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 119996 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 119935 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 119874 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //