Array 1 213875-214322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXSK01000011.1 Photorhabdus luminescens subsp. luminescens strain DSM 3368 Contig010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 213875 28 100.0 32 ............................ AACAATGTTCCTTGATGAGCCTCAACTGTTAA 213935 28 100.0 32 ............................ TTGCCAGTCGAGCGGGTACATAACGCCCAATT 213995 28 100.0 32 ............................ TGTATCGGGCATGGGGCTTCACCCCTGTCCGG 214055 28 100.0 32 ............................ TTTACTACGCCCAGTGAGTTGTTAGCTTGGTA 214115 28 100.0 32 ............................ GGTTGATGAAACTGATGTTCTTGCAAATCTGA 214175 28 100.0 32 ............................ ACGTTAATATTAATTTCTGCCACATGACCAGC 214235 28 100.0 32 ............................ GCTTTAGCGGCTGTACTTATCACGAGGAAGGA 214295 28 92.9 0 .........................GC. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCTTTGGTTGCAACTTGGTGTTATTAATGAGCAGGCAAAAGCGTTGGCAGAGGAAGCTGGTCTGGATGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTGATTATTTGGTTTCTAATCAATGGATGAGAGGCGGTGTCCGGGTTCCAAGTGTTCAAATAATGTTTAAGTTGGATATTGAGTTTGTTTCTTTAGACATCTTATGAAATCTACTTTTACAGTTATTACAATATTTTAAGGCAATTTTAGTTGTTCTTATGGCTGCTGAATTTTGCCAGAATCTACACTTTCGTTGCTATAAGATATGGTGCTTTTGCTGCCCCCCTGTTTTGACCCTTTTTTATCATCAAAAAATAACCTATTGATTTAAAAGAAAAATAAAATATCTCCTAAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : AGCTTAAAAATACGATAACTGCCTTAGATTGCTTAAGGGGTATAAGGGGAGTATTAATTGCGTAGTCTTGGGGCTAATAGCTGATTGCGGATGGACTCTGCTAGCTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGTGCTTCTGCTAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAAGGAGCGGAACGCAAAGTAGCATTGGATGCAATGTCATCCTCTTGGGTTGGTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGTCTTTTTTGCTTTAATTGCGAGCGAGACTTCATCTGTTTCAGGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 878119-877191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXSK01000001.1 Photorhabdus luminescens subsp. luminescens strain DSM 3368 Contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 878118 28 100.0 32 ............................ ACTGGCTTCATTACTCCATATTATTAAAACTC 878058 28 100.0 32 ............................ AGCCGATTGTGAATATATGAAATTAAAACAGG 877998 28 100.0 32 ............................ GGTCTTGCTGCTATAGCTGATGCAGCGGGTAT 877938 28 100.0 32 ............................ AATACGAGATCCATTAAGATGCCTTAATGCTG 877878 28 100.0 32 ............................ ATAAGAAATACAGTCACTCCAATACTCTAAAT 877818 28 100.0 32 ............................ TATGGCAAACCCCGCTTGAGATATTTACAGCG 877758 28 100.0 32 ............................ TGATGTCCCTGGGGGTAAAGCTTGCAAAATTA 877698 28 100.0 32 ............................ GTGTATTAGCTGCGGGCGATTTCATAAGGGGC 877638 28 100.0 32 ............................ GCCAGCTTACAGCTGACCCCCTGACGACTCGT 877578 28 100.0 32 ............................ GCGCCGAATATTCGTAAACGCCCGGACATGAC 877518 28 100.0 32 ............................ CGGCTGCGACGAAGACAAATTAGAGGCGTCTA 877458 28 100.0 32 ............................ TGCGTGATGCAACATAAATTGGTGCAAAATAT 877398 28 100.0 32 ............................ TAACACGAGGTGGAAACATGGCATTTAACATT 877338 28 100.0 32 ............................ ACATAGAAAGTTGGACTTCCGAATATGAGGAA 877278 28 100.0 32 ............................ ATTTTAAAAGATGGGACAACAAAACTGACATA 877218 28 92.9 0 ...T.......................G | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGTTGATGTATGAAGCTTTACAACCCGCTATCCGTTATATGCAACGTCAACAGGGGATGCATCGGGTTATGGCTAATTATATGCCGGATAACCATCGTAGTGGGAAATTGTTGGAACGATTGGGTTTTGAACGCGAAGGTTATGCTAAGAAATACTTGATGATTAATGGAGTCTGGCAGGATCACGTATTAACCGCATTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATGAAGTAAAGCAAGTTAGTAATGATGAATTAAATCACCGTTAAAAATCTGCTTTCTCCACACCTTATTTTTGACCCTTTTTTAAGGACTGATTTTAATTTATTGATTTTTAATAAAATATTATTTCTCTTGAAAAAAAGGGTTTTTTCATTGTTTTATTAAAATATGCTTTAATCGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : TTAGAAAGGATGAATGTATCTGGAATATAAATCAGATCTTTTCTCAAGAGTTCTATCCTGAATAAACTTCAATAAGTTGACTTATTCGGCGCATTGACTTCGGTTGGTGCGCTTTTTAAAGTGGCTATTCGAGCTTTTTGTAGTAAGGCTAGTTGCAAGGTGCTACTAGAGAGAATTCTGAATCTGTAACGTTATCAGTTAAGACAAGCGCCAAATTTTGCTTTTTCTTATGGTAAATAACAGTTAAGAGCTTATTATTTTTGGAATTATAATGAGTGGTAGATTCACATAATAAGTGCAATATCGTTACTTCGTAAGTAAATATATCCGTATTCCTTTAAATAATTCATTGGACGTTTTATTATTATTTCCTAATTGTCATGAAAATAATTTGAATAGTTTCCTTAATCTATAAAAATAGGTATTATTCTGATTTGGTCATTTAATAAATGCCAACTTCGATTTTATATTTTCTGGATAATAGCAATTGAATTGAAAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 967371-967223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXSK01000001.1 Photorhabdus luminescens subsp. luminescens strain DSM 3368 Contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 967370 28 100.0 32 ............................ TCAATGCGAGATTTGAGTACTATTGATTTAAT 967310 28 100.0 32 ............................ GATCAGTTAGTGGCACATAAGGGTTACTTTCC 967250 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAGAGGAGAGTTTATCCGGGGATGGGATGATGGAAGAGGGGTAGATTCATTTCGTTCATTATTGTCATGGCAGGAGGGATCTTATTTGTTACAGGATGTTAATCCAGTTAATAATGTTGTTAGTTTCTCATCTCATGATCGTGCGGCGCTAAAGTGGGATACTCCTCAAGATAAAGCCATTTCATTGTGGGCTAGGTATGTACATGCAAATACAAATAGATGGATTGCTGATACTACTTTTATAGGAGTCTCAAGGCCACGCAATATAGCATTTAACTACATAGTGAGAGCAGCATGATGACTGAACAAAATACCCTTTAAATCAGAAACAGAAGTAGAGGTTGTTCTACTTGGATGGAGGGAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTATTTGTCTCGTAAAAAAGGGTTTTTTATTTTTTATAATGATTACTCTTCAATATTCAGTAGGTTGGGGTTAATATGTAACT # Right flank : GTCAGCACTCTCATTTACCGACCGTTTTCAGAACTGGCGACTTAAGTTCTATTGCTGAGAACAGTGAATGTATGTTTTATGAAGATGGAGAGTTCTGTGGCATTCCAGAATACTGTCGTTTAGATGTTTATGCCTAAATTTCGTAAGATTCATCTTGGAACTTAAAACAAAAGGAGTTGCTGGAATAGATAGAATATATAAGAGCAAAATAGTTTTCAGATGTTAACTATAAATGGTTTGGATATATTTTCGATTCTAAGGTATTGAATTATTTATTGCTGAAAATTATATAAAAACAGTCAATCTTCTAATAAATAGGAATGATGTATTACTCTTATTTATGAACTAGACTCTAATTTGAATAAATTACAGTCGGATTATTTTTGTAATTATTAAATATGTTGATTATAAAAAATATTATTTTTCTTAAGGAGGAAGTACATGAGTCAAAAAAATGATTTTAAGGCTTTTTCTATTAGCAATAGTGCTAATGTAATTAG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 972348-971900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXSK01000001.1 Photorhabdus luminescens subsp. luminescens strain DSM 3368 Contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 972347 28 100.0 32 ............................ AAAAAGATCTGGCGGGTTTGTTTCACCGCAGC 972287 28 100.0 32 ............................ TGTTCAAAAATGAACCCTTGTCACACAGGAAT 972227 28 100.0 32 ............................ ATCATTGACGCGCACCCTTTTTTTAAGCCACC 972167 28 100.0 32 ............................ TAATCGAGCACCTCCGGTCTTCTCGTTAAGTT 972107 28 96.4 32 ...........T................ ACAGCGACACAGCGGCAATTGATACACCCATT 972047 28 96.4 32 ...........T................ ATCGTGCGTCGAATAACAGATGTCCTGCAATA 971987 28 100.0 32 ............................ GGACGATAAAGGTGGTAATGGAAAAGAACCCC 971927 28 89.3 0 ..TC.......T................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.8 32 GTGTACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGGTATTGATAGTGGCCGCGGAGTTTTAACTCATCAAGGGGATGCTATTAGAAATATTGAGGGGGCATTTCCTGGAGCGATAACAAATGGCTTTCATCTGGCAACAAAAGGGGCTTGTTATGCTAGCGCAACTTTTGGGGTGGCTACAGATGGTAAGCCTAAATCGGTAGGTCATTTTACCCCTGATGTTGTATACACTGAATATGGTTTTGGGTTTGACGCCTCAAGGGTTGTTCCTGTAGCCCCGGAGAACCGCCCTCGCAACATAGCCTTTAATTACATAGTGAGAGCAGCATAATGACTGAACAAAATACCCTTTAAATCAGAAATAGAAGGAGAGGTTGTTCTACTTGGATGGAGGGAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTATTTGTCTCGTAAAAAAGGGTTTTTTATTTTTTATAATGATTACTCTTCAACATTCAGTAGGTTGGGGTTAATATGTAACT # Right flank : GATAATGCTACGTTGTTTTCCTCAGACTTGCGGATATGTTCTTCTAGACAGTAGTGAGTCATATTAAGATGATTAGGGCATACAAGTATTGGTTTATTAAAACAAGTAATACTTGTTTTTAGGGTGGGTTTATTTTTATTGATTGTTGGAAATGTGATTGCTTAGACATTCTTAGATGATAGTGAAGGATACTAGGGCAGAAAAGCCACCGAGTGGTGGCTGGTATAATTATTGTGCTTTCTTTCTAAAGTTATCGTCGTTTTTAACGAACTCAAAAGCATCAAGGATAATACCTGTTATCCTCAATATATCTTCTGGCGCTTCTATAAATATTCTTGAGTTATTAGCAGATAATCCAGCCCTATTAACTTCGTTAGCTAATATATCAGTTAGCTCAATAGGTATCTGGATGTAAGGTTTATTCTTCTTGTCAAAGTATCTTATTATCCATCTATTTGATTTTCCTTGATAAAGAATTCCAAAGTAAGATTCTGTATCCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1193525-1193016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXSK01000001.1 Photorhabdus luminescens subsp. luminescens strain DSM 3368 Contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1193524 28 100.0 32 ............................ GTTGTTATCACACATAATGTAAATACCAACGG 1193464 28 100.0 32 ............................ GAAGACAGTAGGATCGTAAGTTTCTGCCATGT 1193404 28 100.0 33 ............................ AATCGCATTTGACGGTTCATGTTCCGGCATACA 1193343 28 100.0 32 ............................ ATAGAGTGTACGAAGTTAGGGCTAATACCGTT 1193283 28 100.0 32 ............................ ACACGGTTGGCCGTGGAATTGAACGGATTTAA 1193223 28 100.0 32 ............................ AGTAGACTCACGAAATCGCTTACCTTGATACA 1193163 28 100.0 32 ............................ TGGATGCCATTCTCCGTTCTGACATGAACATT 1193103 28 92.9 32 ...........C.T.............. AGTTGAGCATGATGTTTGCGCGGTTTCCGGTT 1193043 28 78.6 0 ...........C.........AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 9 28 96.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTATCCTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGATTGATATCCAGCCGGCCCCTCAAGATACTCGATATCGTCGTGTGAGCCGAGTGCAGGTAAAAAGCAACGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAGCAAGCTTGGCAACGTATTCCAATCAGCAAGGAACAACGTACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGTCAAAGCTTTCTGTTGTTTGTCGAACAAGGGCCAATACAAGACAGCCCAGCGTCAGGCGTTTTCAGTTCTTATGGATTAAGTTCATCAGCTACCATTCCTTGGTTTTGACCCTTTTTTTGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATCATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TCAATCGAGTGCGCTAAAATTAAAATAAAGAAGCCTATTTCCGTCCTGATGAGCATCAATTCTTATGCTTTTGAGCATACGTTTCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAACCACTTACGGGTTGGTCCGACCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCTACTGGGTGATAGCCTTTGGGGACCATTACTACATCTTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACGCGTTGCATGCAGAATCCTTGAGATGGATTCAAGCGATGGTAATAGGTTTCTTCCAGATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAACTGGTACAGCCTTCATCGGTAAAGACTTCAACCACCAGCAAGCTATCAGCAGGTTTGTTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTTCCACGTTGTTCTGCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //