Array 1 36151-35207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYJ010000003.1 Streptomyces sp. RT42 RT42_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36150 29 100.0 32 ............................. AAAGGCAAGATCGGGACGAGGGCCTCGACGAG 36089 29 100.0 32 ............................. GAGGCGTCGCCCGGGTCGTCCACGCCGAAGCA 36028 29 100.0 32 ............................. GTGAGGTCCCGCCACTGGATACGGCCGAGCGC 35967 29 100.0 32 ............................. GGGATCGGGACCCTGCGGGGCACCATCCCGTA 35906 29 100.0 32 ............................. CGCCACCGGCCGCGCGCGCCATCTATGCGGAC 35845 29 100.0 32 ............................. CCGGCGAAGGTGGCGGTGACCGGGGCGATAGC 35784 29 96.6 32 .....G....................... GCGTCGTCGTCGGCGTCTTCGATGGCGACGTT 35723 29 96.6 32 ................T............ GACCGCCACGACGCCCACGAGTTCGAGGTGTA 35662 29 96.6 32 ..........T.................. AAGTTCGCCGGCTGGAAGGACGGCACCCCGAT 35601 29 100.0 32 ............................. GACGGGGCGGGCCCGAGGGTGTCTGCCTTGCT 35540 29 96.6 32 ...T......................... AAGCCGGAGCGCCGGGCGCCGTACGACGCGCT 35479 29 93.1 32 ..........A...T.............. ATCCAGCGAGCGTGGAAGCGCGCGGCGAAGGG 35418 29 100.0 32 ............................. TTCGGGCTGTAGCCGCCCTGCGGCCGGCCACG 35357 29 100.0 32 ............................. CTGGCGCGGTACGAGACGTACGACGTGAAGGC 35296 29 96.6 32 .................A........... CATGCCGACGTAGCCGATCCTGTGCCGGATGC 35235 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CTGACACGCGAACGCCGGGGTGGCCTTGCCGACGTCGTGCACACCGGCAAGCCACACTGCAAGGGCGCGTGCGTCCAGTTCCCCCTGCGGCAATGCCTCGGCGATCAGCTTCCGCACCCCCACGGGCAGCCACCGGTCCCACAACAGGCCGGCTACTGCGGCACTGTCCTCCATATGCCGCCACAACGGCAGCCAGCCATCGGTGTCATAGTCGTGTTTGGCCCACACCGACCTGGCCGGCTCCCCAAGCCGACACAGCAGGCCGGAACAGGCGTTCCCCCCATCCCTCATGAGGGATTAATACAGGGAGAACCCGGTCTCACACGCCGAAATGAGAAAACAGAAGGATTCACAGGAAGACGGCATCCTCAAGTCGTATGATCATCGGCCGATCCTGGAAGTACCTACGGACCTATTGTTACCTAGTGTCCCACTTGCCGGAATCTATGAAGGTCACGGAAAGTACACCTCTGCGGCCATAAACTCGCAGGTCAAGCAGT # Right flank : TGGCGCTGCTGCTCGGTAATGTCGACGGCTTCCTCTAGCTCCTCCCCGGACGCCATGGTCGCCAAGTTCGGATGAACCTCGTTCACGACGAAGGCCGCCGCCCTGTGCTGGGTGATGGCCTTGAGTCACAGTCGTCGCGCAAGCGCAGCGCAACAGCGAAGCCCTTCGCGGGTCTACAGGCGGGACGCCGGTGTACTCCCGACGTCCCTGGCCCCCTCCCCGTTTTACAGGTCCAGCCACGCCAAGAGGACCTTGGCGAGTACAGCCGCCGTCACACTTGAGCTGACCTGAACGAGACCACGCAGCAGGTGGGCACGCATCTTCTTACGGGTGTTCTTCAAAGGGATTCCCTTCTCAAACCGGCCCGCCCCACCGTGCGCCGGGGGCGACTCCGCCGCGGCAGACCGCGGCGCGCTGCGTCCCCGTTCGCCTGGCTGGGCGGATGAAGCTTGGGAAAGGGCCTGCCGGAACATTACCTTCTTCGCACGGGCCGGCGGGAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45889-46589 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYJ010000003.1 Streptomyces sp. RT42 RT42_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45889 29 100.0 32 ............................. AACCAGCAGTGATCGGCGATCTGCTTGCAACG 45950 29 100.0 32 ............................. GGCGGGAAACTGCGGTCGTCGCGCAGGCCACG 46011 29 100.0 32 ............................. GGCCTGACGGCCTCGCCCCCATCGACGCCGAC 46072 29 100.0 32 ............................. AGGAAGCGCGACTGGGTCAACGCGGCGCGGAC 46133 29 100.0 32 ............................. GCGGGTGTCGGCCACACCGCCGGAACGATCAA 46194 29 100.0 32 ............................. CACTCGCCAGCTCCCGCAGGACCCCTACATCG 46255 29 100.0 32 ............................. GTGACGGCCGACTCGGTGATCGAGGAGCGCTC 46316 29 96.6 32 ....................A........ GACCTGCGGATCCCGCTGTTCGCCGACGTTCT 46377 29 96.6 32 ....A........................ GTAACCAGCACGGCCGGCGACTCGCCGTCCCA 46438 29 100.0 32 ............................. GTGACGGCCGACTCGGTGATCGAGGAGCGCTC 46499 29 100.0 32 ............................. TGTGCGGGAACTTGGACCAGGCGATGCAGTTG 46560 29 82.8 0 ...............T.....TA.C..G. | A [46579] ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : AGGCATCAACTACGACGGTCCAGAGGACTACGGAGACAAGCTCTGGTGACCGTCATCGTCCTGACCAACTGCCCAGCCGGCCTACGCGGCTTCCTCACACGCTGGCTACTGGAGATCTCCGCCGGCGTGTTCGTGGGCAACCCCTCCGCCCGGGTCCGCGACGCCCTCTGGGACGAAGTCCGACAGTACGCGGACCAGGGCCGTGCTCTGCTGGCCCACACGACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCAGCCGACCGACCACACAGGCATCACCTTGATCCACCGCCCAGACCCGAACGCACCCACCGCCACCCCAACTCCCCGGAACGGTCCGCCATCCGGCTGGAGCAGAGCCTCCAAACGCCGACGCTTCGGCAGAGGCTGATGCAAGCCGAGTCACGCATGCCCCATTTGCCGGAATCGCAGCAAGTGCTCGAGAACGGCCTGCAACGCCAGTAGAGCCGCAGGTCACCCAGT # Right flank : CGGTCTGGGTGGGTCGGCGGGAAGGTCCCCCGCGGCGAGGCGACCAGGTCGTCCCGGCGCCAGCGAGAGTTGTCCGGTGGTGCAGGCCCACGCCGACTCGGTATCAAGTCGTCCCCACATCTGCGGGGGTAGCTCAAAGGCCGGGGCCGGCGAGCACACACCGGGCCAGTCGCCCCCACCCCCGTGGGAGTTGCTCCGCACTGATCGGCTCGCCCCGGACGGCGAGGCCGTTGCCCCCCCCCCAACCGCGGGGTAGCTCTGTCAGCCCCGGCTCGTACGGTGATCGCGAGGTGTCGTCCCCGTGCCGGGGGGGAGGATCCCTGGAGCACCTGATCAGACGGACGCTGGGCTGGTTGTCCCCGCACTGCGGTGGTAGCTCCTGTTCGACGGTCCGCTCGGGTGGGCACACCAGGTTGTCCCCTGGGAGCCATGCCGATGGCCATTTACGACAGCTCCCAAGGGATGTAGCCGAGGTTCAGGTGCCCGAGTCCAGCCAAGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //