Array 1 5413-4651 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QXNK01000068.1 Rodentibacter pneumotropicus strain FD987 FD987_S15_L001_R1_001__paired__contig_68, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      5412	    36	  80.6	    30	AA.C.GT.A.T.........................	CGAAATATATGCGGGTTGGTGTAGAGCAGG	
      5346	    36	 100.0	    30	....................................	TTATCACCCGTTGTCAATTCGTCCATCGTA	
      5280	    36	 100.0	    30	....................................	GAGCTTTCCCTCCCTATGGTCGGGTCGGGC	
      5214	    36	 100.0	    30	....................................	AAAGCTCCGGAAGGTAAAGTGCTTGTTGTT	
      5148	    36	 100.0	    30	....................................	TACTCTAGTTAGCTTTCTAAAGTACACACA	
      5082	    36	 100.0	    30	....................................	TTATAAACAATTCCAGCTTACAGTGATGGC	
      5016	    36	 100.0	    30	....................................	TCATCACTTTGAGTATGTGCGAGAATATAA	
      4950	    36	 100.0	    30	....................................	AATTAAGGTCGATCTATGCTGACGGGCAAG	
      4884	    36	 100.0	    30	....................................	TAATTTTTAATGCTTTCGATACCGTTTTGA	
      4818	    36	 100.0	    30	....................................	CCAGTTCGAGCCGGAATGTGAACAAGAACC	
      4752	    36	 100.0	    30	....................................	AATTTACTATATCACCCAATGCACAGGGAC	
      4686	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        12	    36	  98.4	    30	GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT	                              	       

# Left flank :   GTATCATGATACTTCTGAAATTTTTACCGGTGATTTACCGACCCCCATAAAATATTTCAACCCTGAAATTACCCAAGCCTATAAACAGATTGAGAGTGCAGCAGAACTCCATTTGATCAGCCTTCTCCCTCAAGAATTACAAGAAGATTTCGCTTCTTACCTAGACAGCGAAACTTTTTCGGATGAAGAGAAGCATCTAGTCAAACAAGCCGACCTCATTTGTGCCTATATTAAAGCCCAGTTTGAACTGGATAATGGCAATCAAGAATTTAAAACCGCTAAAACCAGACTTGAAGCCCTTATGCAACAGTGGCACAGCAAAGAAATGGATTATTTCTTACAGGTATTTATGCCAAGTTTTGGACGCTCTTTGGATGAGATTGCGTTGTGATTTAGAGAAAAGTGCGGTTGAGAATGAGGCTGTTTTTGATACTTTATTTAATAAGTAGAAAAGATTTTGATGTGAAGAGTCAAATTTTCATCAACTTGAATACTTTTAA
# Right flank :  ATGGAGAGCAAAAAGCCTTGAACTGTAAGGGTCCAAGGCTTTTTTATCAAAAGAAAAAACAGTTTAAAACAATAGAAGTTGATTAGAATTGACCTTTTTTTCTTGTAATTTTTTCTCTCCAACTAAAATTTCCATATTAGCAAATTGCTTTTCTGTGATAGCAATGCAGCGAATTGAACCTTCTTCCGGTAAATTTGCGACTAATCTTTTATGATGCTTTTCCATTGAATCTCTTCCTCTTACAATTCTTGTGTAAATAGATAGTTGTAGCATTTGATATCCATCCTTAAGTAAAAATTGGCGGAATTGATTTGCTGCTCGCATTTTTGCCTTAGTAGTAACCGGTAAATCGAATAATACTATCATACGCATGAAAATATTCTCACTCATATTGATGCTCCGCAAGCGGTAGAATTTCCGGTAATTTTAGCAAATGGGCCTTTTTACTAATTAATGCAGCTTGCAAAGTGCCAACCATTCTATCAATTGCGGTTAACGTA

# Questionable array : NO	 Score: 6.18
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.77   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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