Array 1 483-89 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVHW01000043.1 Lacticaseibacillus paracasei strain AM33-2AC AM33-2AC.Scaf43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 482 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 421 28 100.0 33 ............................ CGCTGTCTTGCCTCACGCACAGTTTCAGCAGCC 360 28 100.0 33 ............................ TGGAGATCAAGATGAGTATTATGCATACGTTGG 299 28 100.0 33 ............................ CGACTGATACTTCTCTGAACCGGTTCATTTGTG 238 28 100.0 33 ............................ TGCCATTCCACAGTCCGCTGAAGAATGAAGCGA 177 28 100.0 33 ............................ CACACGATGACGAGCTTGGCAGTCACTCGGTTA 116 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : TCCCAACGCTAGACGACGCAACTCAAGAACAAGTCGGTTTTCCCCGCACATGCGGGGGTGATCCCAAGCTAACCTTTCGCCTAGATCGTCTTGATTTGTTTTCCCCGCACATGCGGGGGTGATCCCAAAAGTCTGAACGCGTTTATCATCTCGATTTCAGTTTTCCCCGCACATGCGGGGGTGATCCCCATAGCGGCGTCAACATTAGTACGCTCAATCTGTTTTCCCCGCACATGCGGGGGTGATCCGGGGATGACTGTATGAACGAACGCAATGAAAAAGTTTTCCCCGCACATGCGGGGGTGATCCTTTCATGGTGCCCTCCTTATTGCTGTGGAGCAAGTTTTCCCCGCACATGCGGGGGTGATCCCTAATGTTACTGATATTTTTATCAAGCCATTTGGTTTTCCCCGCACATGCGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCCTCTGCCCAGTCACCAATCGTGTATCCAAAAAAGGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2045-613 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVHW01000043.1 Lacticaseibacillus paracasei strain AM33-2AC AM33-2AC.Scaf43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2044 28 100.0 33 ............................ TGAACGCGGTTCTAATGTCTGACAACAACGGCG 1983 28 100.0 33 ............................ CACGTCCCGCTTCGTCTCATTGTTCATCGTCAG 1922 28 100.0 33 ............................ CGCCTCGGCTTGATTGAGCACCTGAGCATACCA 1861 28 100.0 33 ............................ CCCAACTAACAGAGACTTTTTCATAGTGAATTC 1800 28 100.0 33 ............................ CGAAGTTACGCCGCCACAAACGCCGAAGCTTGT 1739 28 100.0 33 ............................ TCAGTCCTTCGTCCAGAATGTCCTGAATCACGC 1678 28 100.0 33 ............................ CTGTGTTTCCCATAGCACCCAACCCCCAATCCC 1617 28 100.0 33 ............................ CGTCATGCAAACAACAAGGGGGACAATATGAAG 1556 28 100.0 33 ............................ CAACACTTTTGCTCCGAAGGTTGATTCGATCGG 1495 28 100.0 33 ............................ TGGTGTTATCAATAAATTGATTGCCAACATAGT 1434 28 100.0 33 ............................ TGACAAGGCCAATACGGCTTAACAAAACATCAA 1373 28 100.0 33 ............................ CTATACTTTTACTGGTGCAGGCAAAACTTATCC 1312 28 100.0 33 ............................ TGGGCGAACCGTTGCACAGGACACGCCACAGCA 1251 28 100.0 33 ............................ TGGATTCGTCAAACTCTTAGTTTTGAGAATGAC 1190 28 100.0 33 ............................ CCATAGAAAGAGGCACAACGACACTCCCACCAG 1129 28 100.0 33 ............................ CACGCTGAAACAGATTTCGGTTGATGTTGCTCG 1068 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 1007 28 100.0 33 ............................ CAACGCTAGACGACGCAACTCAAGAACAAGTCG 946 28 100.0 33 ............................ CAAGCTAACCTTTCGCCTAGATCGTCTTGATTT 885 28 100.0 34 ............................ CAAAAGTCTGAACGCGTTTATCATCTCGATTTCA 823 28 100.0 33 ............................ CCATAGCGGCGTCAACATTAGTACGCTCAATCT 762 28 100.0 33 ............................ GGGGATGACTGTATGAACGAACGCAATGAAAAA 701 28 100.0 33 ............................ TTTCATGGTGCCCTCCTTATTGCTGTGGAGCAA 640 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 24 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CTAATGTTACTGATATTTTTATCAAGCCATTTGGTTTTCCCCGCACATGCGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCCCCGCACATGCGGGGGTGATCCCACTTTGTATTTTCCAGCCATTTCCCACTTCACGTTTTCCCCGCACATGCGGGGGTGATCCCGCTGTCTTGCCTCACGCACAGTTTCAGCAGCCGTTTTCCCCGCACATGCGGGGGTGATCCTGGAGATCAAGATGAGTATTATGCATACGTTGGGTTTTCCCCGCACATGCGGGGGTGATCCCGACTGATACTTCTCTGAACCGGTTCATTTGTGGTTTTCCCCGCACATGCGGGGGTGATCCTGCCATTCCACAGTCCGCTGAAGAATGAAGCGAGTTTTCCCCGCACATGCGGGGGTGATCCCACACGATGACGAGCTTGGCAGTCACTCGGTTAGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //