Array 1 366483-365323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUM010000001.1 Campylobacter concisus isolate 2010-30795, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 366482 30 100.0 37 .............................. GTTTTAGGTAGGTGCTTTTGCTTAGTGTTCGCATGCA 366415 30 100.0 33 .............................. CCGATTATGAGAGCGTGGCGTATATAGTTTTCG 366352 30 100.0 36 .............................. TTTCTTACGCTGTCTTGGTAAATATCCCATAACGCT 366286 30 96.7 38 ......................C....... GCATTGTGCCAAACGACAAACTCAAAAAACAGCTTAGT 366218 30 96.7 37 .........................A.... AGTTTTGGAGAATAATAAATTCGGCATGCGTGGTTTG 366151 30 100.0 37 .............................. CTAAAAATAGTGAAGTTGTTTCATCTGCTAAAACTGA 366084 30 100.0 37 .............................. ATTTGCTAGTTTCTAAAAAATCAGCCAACTCACTATC 366017 30 100.0 36 .............................. ATCCATTTCAAGTAGAGGCGACCGAGCAAAACATTA 365951 30 100.0 35 .............................. CTTCGTGGCTTAGATATCGCAACTCTAAACTGCCC 365886 30 100.0 37 .............................. CGTTGATTGCCCTGGGCTGAAAATCACTTTCAGTTTT 365819 30 100.0 40 .............................. TTCCGTTAAACTCAGTCCCAAATTTTAAGGATATGATCCC 365749 30 100.0 36 .............................. TGACTGGAGTAATGGCGGATATGGTGACGATACCCT 365683 30 100.0 35 .............................. TGGGGTTTGCACCCCATACCCCATCTCTTTTTTCA 365618 30 100.0 37 .............................. TGCACAGCAGAGCCTAGTAGCAAAGCTTTTGTAGGCT 365551 30 100.0 36 .............................. GAAGCTTTGCGGTCGCTCTAGCCCTTGGTTTTTTGC 365485 30 100.0 36 .............................. ACTTGATCGAAAATATAATCATCAGCTCTAAAGAAA 365419 30 100.0 38 .............................. TCGTCGCTTTCGCGTTTGGTATATGCGTCAATCTTGTC 365351 29 90.0 0 ...............A........A-.... | ========== ====== ====== ====== ============================== ======================================== ================== 18 30 99.1 37 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTTGATCCTCGCATCGGCTTTTTACACGAGCCAAACTACCGCGCACTAAGCCTTCACCTCGACCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGTTTATATTTAATATGCTAAATAAAAAGGAGATCACCGCAAAAGACTTTCAAACAGACGCCGGCAGGATAAAATTTAGCAATGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGTGAGACGCTCACGGTGGGTGGCAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCGAATAAGCTTAAAAAGTGTATCTGCGAGGATGCGCCTTATGAGGGCTTTAGGTGGGAGTGAAATCGCATTTTGATAAAGCGTTTTTTAAGATTTTAGAATGCTTGAAATTTAGGGCTTTGCGTATTTATATGTAGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : CCACCAAACATGATTAGCGACAACCGCAATCACTCTTTTGATAGTCGTTTTTTCGGAGCAGTTCCATATAAATTTTTAGTTGGCAAAGTTAGATGGCAGCTATTTTGACACAATTTAGAAAAATACCTTGTCCAAAGATTAAAATAAAGCAAATTATCGGATCAATGAAATTTAAAGAAGGTTATGATATTTTTTGTCAATTATAATTAAAACAAAAAATATATGAATTTTTAAAACCTACTTGTAAAGACAAGCAGGTTTTAAAATATTTTTATTTCTCTAGCTTCTCTTTAAGTTTTTCCTTTTTAGATTTAGCTTTTGAAGCGGTTTTTTCTTTCTTTTCTTTTACTTTATCAACAACTTTATCTTTTTCGTCTTTTGCTTTTTCGCTTATACTAGTTTCGTCTTCTTTACTAGAAGTTAGCTCTTCTTTACTTTTAGAAGCTTTCTTTTTAAATTTATCTTTTTTATCAGAGATTTTTTCTTTCATCTCATCTTTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 5631-7912 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUM010000008.1 Campylobacter concisus isolate 2010-30795, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 5631 37 100.0 37 ..................................... GCTCCTTTAAAAATAAGATAAGACTTAATAAAAATAA 5705 37 100.0 39 ..................................... AATTTTTGAGCCTCTAAATAGCTTGGATAAAATGCCCAG 5781 37 100.0 41 ..................................... AATTTTGCAAATGATCTAGATTTACATCACTATAACCAGTG 5859 37 100.0 38 ..................................... AAACTTACATCTGTCATTTTTGACTCCTTTAAAAAAAT 5934 37 100.0 44 ..................................... GCTAATTGCAAGAACGCAACTGTCACGACGCTTCTGCCAGATGC 6015 37 100.0 43 ..................................... TATGTTAGACCAAAGAACTTTCTGTTCTGCTGTCAAAGAAATT 6095 37 100.0 41 ..................................... CTTCATGGATATGCTCTTGCTTACCCACGAAAAAAAATTTG 6173 37 100.0 42 ..................................... GCGCGTTCTGGGAGTTTTTTAAAGAAACTCATAAGAGTTTCT 6252 37 100.0 43 ..................................... CGTTGTCGTCGTCACCGAGGAAGTTGAGTTTAAACTCTTTAAC 6332 37 100.0 39 ..................................... GAACTCCTTTACTTCTCTTGTACCTATAGCCTCAATTGT 6408 37 100.0 40 ..................................... ACTGTTGTCATATTCTCTAGCTCGCTCTGGTAGCGAGTTA 6485 37 100.0 38 ..................................... AAACCAAGGGCGGGGGCTGGTGTGGCTATGAAAGCTTC 6560 37 100.0 38 ..................................... GAACCAGCTACTGTAGCAACAAAATCTTGAAAAGTTTT 6635 37 100.0 43 ..................................... ATAGCTACCTTCATCAGAGTCTTTAAACTGCTCACTATTACAA 6715 37 89.2 41 ..TA................G...........A.... AGCTTCATGAAGCTCAGCCTTAAACACACGCTGCGAGTAGT 6793 37 100.0 36 ..................................... AGAGATTTTCTCTTTTCCACTTTTCCTATCTATGAA 6866 37 97.3 39 ....A................................ ACTAAATTCTCTAGTGGGAAGAAAATCTTAGCTCTGCCA 6942 37 100.0 40 ..................................... AACATCCCAGTCGTCAAAAGCATAATCGAAAAAGCTGAAA 7019 37 100.0 40 ..................................... AACATCCCAGTCGTCAAAAGCATAATCGAAAAAGCTGAAA 7096 37 100.0 41 ..................................... TTTTGAGCATTGTAGCGCTCAAGGGAAATTGTATCCCCTAA 7174 37 97.3 44 ......................T.............. GTGTTTGCTTCGATTTTTAATCTGTTTTCGCACCAGTTTGGCAC 7255 37 100.0 41 ..................................... GCTACCCAACGATCACCACGACGCTCAAAAAATTGAACGTC 7333 37 91.9 40 ..TA................G................ TATCTCATAGTAGTATTCATCATCTGAACTTGATTTATAA 7410 37 94.6 42 ..TA................................. TTCTGAATTGGTATTGTTAGCCTAGAGCTACCTTTACGTTTC 7489 37 100.0 40 ..................................... AATTCGATGTCACGAGTTAGGTTGCCTATTAGAACTATTT 7566 37 97.3 41 ...C................................. ACGCCGGCCGAGTTAAGTTCAATAAAATATTCAATTTTCTC 7644 37 97.3 39 ...C................................. CGTTGTCGTCGTCACCAAGGAAGTTAAGTTTAAATTCCT 7720 37 94.6 38 ...C.......T......................... GTTTGATATGCTACATACTCTATTGTTTTTTTAAAGTA 7795 37 91.9 44 ...C..........C....A................. ATTTGTATTTTTCTCAACCATATTCATAGCAAATGAGTGCCTTA 7876 37 94.6 0 ...C................................T | ========== ====== ====== ====== ===================================== ============================================ ================== 30 37 98.2 40 ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : AAAGCTGCATGGCTAAAAGCGAGACCTTAGGCGATGGCAAGATATTTTGCCCAAGCGACACCTATGTCTAAGCGCTTTTTTTAGGGATTTGATTTTCGAACTTTTCTAAATTTCAAAACGCCCTTTTTACCGCATTTTTATGTTTTATTAAGTTTCAAAAACTTCGAAAATCTCAAATTTCTCTATCTCAAAAAAGACTTTCTCGAACTTTTGCATTTTTGCACTTTTAAAGTTGCCTTTTTTAGGCACTTAGCATATAGCCCAAATTTGCCAAAGTTCGAAAATCACACAAATTTTCACTTTTCATTTTAGATTTTCGAACTTTTTAGCCTTTATAAATGCCCTTAAACTCGCTATCTTAAGCTATCCATAAGCAAAAGAGTGCGAATTTGAAAAATTCTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAAGCGTTTTTTGGGCT # Right flank : TAGACATATCTATCGAGCATAGTTCTCAAGCATTAATTCATAGACATATTTTATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCACTAAATTGACTATATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGACATATGGGGCGCTTCCTCTTTTGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGCCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //