Array 1 956331-957456 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019176.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA35 strain SGSC 2215 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 956331 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 956392 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 956453 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 956514 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 956575 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 956636 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 956697 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 956758 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 956819 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 956880 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 956941 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 957002 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 957063 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 957124 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 957185 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 957246 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 957307 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 957368 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 957429 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 973715-975378 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019176.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA35 strain SGSC 2215 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 973715 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 973776 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 973837 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 973898 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 973965 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 974026 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 974087 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 974148 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 974209 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 974270 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 974331 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 974392 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 974453 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 974514 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 974575 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 974636 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 974697 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 974758 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 974819 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 974922 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 974983 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 975044 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 975105 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 975166 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 975227 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 975288 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 975349 29 96.6 0 A............................ | A [975375] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //