Array 1 450368-448483 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXA01000002.1 Streptomyces caatingaensis strain CMAA 1322 contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 450367 27 100.0 33 ........................... CGTCGCTGCGGGGGACGGACGGTTCGCCGCAGG 450307 27 96.3 33 ...........C............... CCCGGCAGACATTCGACGTGCTGGTCTCGTACC 450247 27 100.0 33 ........................... CTCGATTACGTCGGCCGGGGTGTAGGCCACGCC 450187 27 100.0 33 ........................... GGAGGCCGAGCGGCAGCGCCGGGGCAACGAGCA 450127 27 100.0 33 ........................... GAGCGGCTTCGGTCTCCGCCGGGCGGTGGGGCC 450067 27 100.0 33 ........................... ACGTACCGGCTGACAGCGCGGCTGACCCGGGAC 450007 27 100.0 33 ........................... GCTCAACGACCCCTTCCACACCGACGGCCTGGC 449947 27 100.0 33 ........................... GATCCGGTCGGACGAGAGCCTGCCCGACCTGGT 449887 27 96.3 33 ............C.............. ATGTCCTGGGCGAGTGGATCGCCGGTCTCCTGG 449827 27 92.6 33 ....C..................A... CTACGACCCCGCCTGGAAGACCCAGCCCACCCC 449767 27 96.3 35 .A......................... GGAAGGCCATGCCCTTCGCGGACCGTCTCACCGCC 449705 27 92.6 33 .C......................T.. GACGGGCCGGCGCGTCACCCTTGCCCACGCCCA 449645 24 88.9 33 ...........---............. CCCTTGCCGCCGTCGGCCTGTTCGCCCCGGCCC 449588 27 100.0 33 ........................... GGAGACGACGATGGACCTCAACAACGCGACCGC 449528 27 96.3 33 T.......................... GCCGGCCTCGAGGACCTGTTGTCGCGACCGGGA 449468 27 100.0 33 ........................... GCGCGGCCCCGCGCTCCTTGTCGAACCCGGAAC 449408 27 100.0 33 ........................... GGTCAGGCTTGGGGCGGATCAGCGCGATGACCG 449348 27 96.3 33 .................T......... GAGGCTCGCGGTCGCTCGCTGGGAGTCGGGAGA 449288 27 96.3 33 .......................A... GGTCGGCCCGGACTTCGTCGACGTCGTCCAGAC 449228 26 92.6 34 ................-.......T.. GGTGAATTTCGCTGGGGGTAAGGCCGTAGCGGCC 449168 27 96.3 33 A.......................... GCGCCGCAAACACCTCCCGCCACCGGCCCTCAG 449108 27 96.3 33 .................T......... TAACCGGCTTGGTGTACGACACGTCGCGTCCGC 449048 27 96.3 33 .....T..................... GAAGACGTCGAACACTGGCTCACCTGGTGCGCC 448988 27 100.0 33 ........................... CCGCTCGGTGATCACCAGCTGTTCCGAGATCGC 448928 27 92.6 33 ......T.....C.............. TAACCGGCGCGCTGGCCGCCGCCACGGCGACGG 448868 27 100.0 32 ........................... ACGCTCAGCGCGGGGCGGTCTTCGGCACCACC 448809 27 88.9 33 A..........A............T.. GCACCGGGCCAACATCGCCAGGTTCCCGACGCC 448749 26 92.6 33 .....A..-.................. GGGCAACGCCGACTCGTCGTAGGAGCCGGTGGT 448690 27 96.3 33 ............C.............. TGGGCAGCGCGCCGAGGGCCGTCCCCTCCGCGG 448630 27 81.5 33 ...........TG...A...A..A... CCCCGGCGACCCAGGGCATGGCCCGGTCAAGGA 448570 27 88.9 33 A..A................A...... TCCGATAGAGAAGCAGATCACGATCACAGGCTT T,C [448546,448561] 448508 26 77.8 0 .C.........A.C.......C-.T.. | ========== ====== ====== ====== =========================== =================================== ================== 32 27 95.4 33 GTCGTCCCCGCGTAGCGGGGGTTGCTC # Left flank : GGCCGCGCGCACGGCTTCCGCGCCGGCCGGCCACATCCGTTGGAAGGCGGGGGTCGCCTTCCCTAGGTCGTGCACCCCGCACAGCCAGGCAAAGAACTGCCGCCCACGGGCGTTCCCGCCGGCGATCTCGTCCAAGATGCGCTTGGTTGAAGGTGCCAGGAACCGGTCCCACATGCGCTCGGCGATGGCAGCGGTGTCCAGGAGGTGAGAAAGAAGCAGGTTCTTCCGGCCGTTGGCCTTGCCCTCGGACTTGCCCCAGAGCGCTCCGATGGCTCTGTCGATGTCAAAGCCGTCGGCGTCGGCCGCGTCATGCATGGACTCACCTATCTCGTAGACTAGTTCGGGACACTATCCTCTGCCTCTGACAATGTCGGCCCGAACCAGCCAGGCACGCGGGGGCAGGCCAACCGCTGTTGTCTGGGCTCCGTGTTCACCGCGAGCCCAGATTCCAACTGAATGAAACGGGCGCTAGTCCCGAGCAACATCGCAGGTCAGCAAGC # Right flank : CCCATCGCGGACGCCATAATGGCAGCGATCATGTCGTCCCCGCCCTCTCAGGGGTACGGAAAACGGGAGCCACACCGTACTCGGAGCAGCTCCCGCACCATCAACTCAGCCCCTCCCAGCCCCCGGCGGCGTCAACGAAGCCCGCCCATTCAGCTCCTCCGCCTCCCCCACCGCCTTGCGGTACGCCTCCGTCACCTTCTCGAACGACTCGCCCGAAGACAGGCCGCCGGCCGCCCTGTTGCGGCGCCCACGCGATCCATCTCGCGGTTCGCCAGGATGATCGCCGAGGTCGCCTCTCGGCGTTCCGACTCGTAGGCCGCCAAGGCCGTGGTCACATCCCGCTCCACAGCCAAGTGGTACGCCAGCACCCGCGCGAGTCGGAAGGACCGCTCCCACAAGTGCAGGCCCGACAGCATGTGCGAGGCCGTCCACGCCCCTTCTTCCTACCAGCAGGGCTCCGACAACCGGTCGTCGTCGGCCAGTTGCCGTTCGACCTCCCG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTAGCGGGGGTTGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 461463-460085 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXA01000002.1 Streptomyces caatingaensis strain CMAA 1322 contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================== ================== 461462 30 96.7 31 ............................C. GCTTCCCGGCCACCGAGTTCAAGGGCTGGAA 461401 30 100.0 31 .............................. GATCGCTCATCGGACCAGCTCCCCGTGCGCC 461340 30 93.3 31 ............................AC TGGCGCGGTGTGCGCCGGACGTCACCGGGTT 461279 30 100.0 16 .............................. ACGAAACCAGGGCAAG Deletion [461234] 461233 30 93.3 31 ............................CT ACAGGGCGGCGTCCCATACGGCGCGGCGCAG 461172 30 93.3 31 ............................TC CGCCCCACCCCGGCCCGCGTGGCACGTCGCG 461111 30 100.0 31 .............................. CCCACGCCATGCAGCGCATGGCCGCCGACCC 461050 30 93.3 31 ............................AC CGCCGGCCAGGACGGGGTCGGCCCAGCGCAG 460989 30 96.7 30 .............................C GACCCGCGGCGGCGATGTGCCGGGCTCGTT 460928 30 76.7 1 ..................T...C.CACGA. T Deletion [460898] 460899 30 93.3 31 ............................AT AGCCGGCTCACCACAGCGCTCCTTCCGGTCG 460838 30 96.7 31 ............................C. CACGGTCGCGTGGTGCACGGGCAGCGCTCAG 460777 30 96.7 31 .............................A AGCTGGTCGAGCACGGCGTGCTGCGGCGCGA 460716 30 100.0 31 .............................. GCTGCGGGCCCGGGCCGAGGAGGTGCGGACG 460655 30 96.7 31 .............................A TGGGAAAGCTGGGCGGGATCACGGCGTCATC 460594 30 96.7 31 .............................T TGGCCCCCACCTCGTGCCGCAGCCGGATCCC 460533 30 93.3 31 .....T......................T. AAAAAGTCCCCCCACCCTGCACACGGCAGGG 460472 30 93.3 31 ..................A..........C CAGCCTGAAGCGGGTGTACTTCACCGGCGGC 460411 30 86.7 31 .......T.......A............CT GGCCGAACGGATCATCGCCCACCTGGAGGCC 460350 30 86.7 31 .............AT........T.C.... TTGGCGACATGTGCCGGTACTCACGAACGCG 460289 29 73.3 146 ..C.........TA-..A......A...CC GCCGGTCTGGGAGCAGTTCCCGCTGGGTATGTCGCCTTCGCATAGCGGGGGTTACTCGAACAGCGCGCCACTGAACCGCTCGTCGCCCGGGCCCGAGTAGCAGGGGTGGTTCGTTCTCGGACGGGGCTTTCAGTCGCCATCGGCTC 460114 30 90.0 0 .............A.......A......A. | ========== ====== ====== ====== ============================== ================================================================================================================================================== ================== 22 30 93.0 34 GTGGTCCCCGCGAGCGCGGGGGTGGTTCGG # Left flank : ACCCGCACACTCAGCCGCTCAGCCGCGCAACTCCTCCCCCACCACACCCAATTGACGAACGCGAAGGAGAACTCCTGATGCACACCGTGGGCCGGCTCATGAGCCACTGCCAACACCTGTCCGGCTGGGAATCCGCCCACGGCGAAGACCGCTGCCCGACCTGCGGAACCCGCCGCTTTACGGACTACGGCGCCCTCCGCCCCAAGGAGTTGCCCCCGGCGGTGACCCCCTCCCCACACGACCGCATCCGCGCCGACAGGGCCGCCGCCACCGTGATCGCACGCACCGTGCGCCACCTCAGCCACTGGGGGCGCAGCAGAGCGGACTTCTGGCGCTGCCAGACCGCCTGACCGGCGGATACCTGTCCACCGGCCGCTCCAGTGCAGGGCAGATAGCACTCGAACCAATCTCATGAGAGCCTGGACCGGCACTCGAACACACTTCCAAGCTCACTGAATAAAACAGAGGTTGATCGCCAGCGAACGCGCAGGTCAAGTAGC # Right flank : TTCACAAACGACGCACGGGATTGCCCCCCGGCGAATACCGGGGGTGGCTCACAACCGGAAGAGGTCCCGCCCTGGGACAATGGCCTTCTACACAGGGTGAGCCCTCCCCCGGCTGCCGCACCTCCCAGTCAGCAAACAGCGACAGCGGACGGCTCACCTACGGTTCCGAGCCGACAGAATCAGTCCATCGAAGTCCACCGGCCGCCATCGGTCCCGGCCGGCTGTCCGGACCGCCCAGCCCTGTTCATTGGAAGCGGGTTCGACAAGGACCACTTGGCCGTCGCCGATCCGTGTGGCCAGGAGCTCCCACAAGCGGTCCCGAACTCGCCGGCTCGGGGTGCCCACGAAGACGCCGGCGTTTACTTCGACCATCCACCGGGTGAGGTGACCGCGTAGCCCTTCTGGAGCCGCGATCAACACGATGACCGTCATCGCGTCTTCTCCTTGGGCGAAGCTTCCCCCAGCTCTGGACCGATGACCGCGATGTGTCGCTCACCCAT # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.20, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGCGCGGGGGTGGTTCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGGGCGGGGGTGGTTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //