Array 1 5561-3888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUF010000083.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 234 CIRM_BIA234-i1-1_scf83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================================================================================================== ================== 5560 36 100.0 30 .................................... CCCTGCCACCCCATCTCCTGTTAACGAGGA 5494 36 100.0 30 .................................... ACGCTACCGGCTTCTATGTTGGTAAGGGGG 5428 36 100.0 30 .................................... GCTCTTTTTATTGTTATCCTCTTTCATCAT 5362 36 100.0 30 .................................... GATGTATACATGTGAGGAGTTCCAAGTGGA 5296 36 100.0 30 .................................... AAAATGTCAGAAGAATATGAAGAATTATTT 5230 36 100.0 30 .................................... CAAAAAATCCGTGTAAGAACTCGGTCACCG 5164 36 100.0 30 .................................... ATGAATTTCTTGACGTTTCAAGTGATGACA 5098 36 100.0 30 .................................... GCGACAATTGCCAGAATAATCGGGCCACCA 5032 36 100.0 30 .................................... CTCCCCAAAATGAAGACCCCTAAGGCCTCC 4966 36 100.0 30 .................................... GGATCGCTGATCGCGTCGTCAGCCAATTTG 4900 36 100.0 30 .................................... TGACAATTGGCGCAATCGCTGAAAGTGGAG 4834 36 100.0 30 .................................... TTCACCACCTTAGGGAACTCGGTCTGCCAA 4768 36 100.0 30 .................................... TGAGTTTTCGACCAGTTTATATATTTTTTT 4702 36 100.0 30 .................................... AAACTGGCGTAGATAGCCCCAGAGTCAAGT 4636 36 100.0 30 .................................... TCGTTATCTTGATAGAATACTTTATCATGA 4570 36 100.0 30 .................................... GATGCGTACTGGTGGGTGATCGTGTCTGAT 4504 36 100.0 30 .................................... AACTCGTGAAAGCGTCCAATGCCTTCACGA 4438 36 100.0 30 .................................... AAAATGATCAGTTCAGAGATGGTAACGTGC 4372 36 100.0 30 .................................... TCACCATGCTCAAAAGCGATATTAAAACCA 4306 36 100.0 30 .................................... GTGCCGCTGACAGATCAGATGGCGGCCGTC 4240 36 100.0 30 .................................... ATAAACGATCATTTCAGTTCTCCTTTTTCG 4174 36 100.0 30 .................................... GTTGACGGTCAAGCTTTCATTGTCAAGTAA 4108 36 94.4 149 ................C...T............... GTTGTGTAGGTTCAAATCCTGTACTCTCCTTGTTTTGGAATATTTCCATTCAATGTTGTCAATTTTCCCGACGTATGTTGGGGGTGGCCATCATAATGGCCTAATACTAAGACGACAATTCTACTCATTCCACGCAGGTGGGGGTGATC 3923 36 75.0 0 ..........A..........C...G..GAC..AAG | ========== ====== ====== ====== ==================================== ===================================================================================================================================================== ================== 24 36 98.7 35 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAACTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACCTGCTATCGCGATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTCTTCAAATTTGGTGGTCTACACTTCAACAAGACACTCACTCGCGATCCATATGGTATAATCGAGACAGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGATGCAGAACAGTTTAACGAAATATCCAAGCTGTGCTTAGAGCTAAAAAAGTCTATTATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAAGACCTTGTTGATTGGTACTAGCCTTCTATTAAAGCCATGTTAAAAAATAACG # Right flank : TGCTTTTCATGATTGAGAAGCACTTTTTTCTATTGAACACAACAACTTAAAAAAACGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCTCTGGACGCTCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAATTGCTTTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCCCAAATGTTAATCGGTGACCTGGGC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //