Array 1 168494-168262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABNND010000002.1 Bifidobacterium longum subsp. infantis strain BI-G201 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 168493 32 78.8 33 ATAA..C..T...-................... GTCTTAACATCCGTGACTTTGACGGATGTGCCG 168428 33 93.9 34 ...........T.C................... GCGTGGGGCGAACCGTACGGTCAGCCATAGGCCG A [168415] 168360 33 100.0 33 ................................. CATGTGTGGGTGTGTGGTTTCGAGGGTGGGCCA 168294 33 90.9 0 A.....G..T....................... | ========== ====== ====== ====== ================================= ================================== ================== 4 33 90.9 34 GGTCGCACCCCACTGGGGTGCGTGGATTGAAAT # Left flank : GGCGTGGGCTGAAATACACCGTGAGGATCTCGAGTCCAATTGGAAGTGTGTGGAGGCCCATGTGCAACCCGGACACATCGAGCCGCTTAGGTAAGGAGGTTTATTCATGTGTGACGGTGTTGTTTTGGTGACTGACGCTGTTCCGTTGGACGGCCACCGTGTGGCGGTCAGGTTCAGCGATGGTTATAGCGGCGTCTTGGATATGGCTAAGTATTTTGGCTATCCGGCGTTCGCTGGGTTGAATGATCCTGCGGTGTTCGCTACTGCGCGGGCTGGTCTCGGTACGGTGTTGTGGGGTGACGGTGATATAGACGTCGCACCTGATACCGCGCGTGAGGAGGCCGTGCCGTTGGGCGCGTAGGCCGCGTTGATGAATCCCGGTTGCCTTTGGCTGCCGGGATTTTGTTTATCCGAACATATTTGGCGGGGTTCCCCGTCTGATGAAAATACCCCAAGAGTGAGGCAACACTCTTGGGGTTTTGCTTAAAACAAACCGATTT # Right flank : ACAGGATTAGCCGGTGTCCCAAATGCGGGGCAAGGTCAAGGCGAAGTGGGAGGAGCAGCATTATCTAGCTGCTTTGGTTTTTCGGCGCGGGGGACGCAGGTGCAAGCCGCGTACTCTCGCGTTGAAGTCGAAGCCCGCAGTGGCGTGGGAGTGGCCGAAAGGCATGATGCTCGCCGCCGCGATTCGACGTTGGAATGCGAAGTGCAAAGGGTAATGGGCGGCTGGCGTGACAAGGCCGCTTGCCGGGACATGGACCCTGACTTGTTCTTCCCCGCCACGCGGCAGGAGGAACGATTGGCGCTCAAGGCCTGCTCCACGTGCCCGTCGATACGCGAATGCGCACGGTACGCGGCGGAACATGCACGGATAAACGGCTACCCGTTGCAAGGCGTATGGGGCTGGATAAACAGAAGCAAAGGCAAGAACAAGATCGGCTGGCAGGAAAGAGCAACCATGAGCATTACGAACAACCAGCGTGAGCTGATACTCAAATGGCACAG # Questionable array : NO Score: 6.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCACCCCACTGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 169874-169641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABNND010000002.1 Bifidobacterium longum subsp. infantis strain BI-G201 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 169873 33 100.0 33 ................................. TATAAATCGACCGCGAACAATTACGTAGAAAAG 169807 33 100.0 34 ................................. CAGAAACGCGCGACCGCGCTGGGCACCTTTGGAA 169740 33 100.0 33 ................................. CGAACAAGCCAGGGACGAAATATTTGGTCAGCG C [169727] 169673 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 100.0 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : CTGCGGAACGTGGCCAAGATTTGCATGAGATACGGTCAACGCGTGCAGAACAGCGTCTTCGAGTGCTCTGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATTTGGCGGCGGTTATGGATGAGTCGCAAGACAGTCTTCGGTACTACAACCTCGGGGCGAAGTATTCCTCGAAGATCGAATATCGAGGAAGGCAGCGACACATGCCTGTTGATGGCGTGATGATGCTTTGATGCCGGATTGGTGCGTGCGTGTGGATGTTGGTCGGTGCGAGCCTCAAGCTCTCATGAAGTACTGGGCTGTTCGCACCACGGTTGAGGACTTCTGAAGACGGTGTATGTTCTTTTTGCTGTTTGATAACTCAAGAGTGGATGATTTGCTGGTATTTCGATTCGGCAGATTTGCGTATCTGGGGAGATATGAATGGATTGTACAGTACAATCGATGCTAAGGAGTGGTCGGAGTGTCCGTATCTTGGGATGCGAAGTCCATTCCCGCG # Right flank : CTTGGGCACCGACCTGCAGACCATTCTCAGCTCGCGTCGCACCCTCACACCATGCAAGGCCGAACCGTCGTCGAGTCGCTAACGTGGTGCGATTGCCGGCATGGAATTGTCTCGCACCGTCTGAGTGGTCTACAATGGCCGCTAATCCAAGTTAGGAGTAGGGCCAGGGATTAAAGGAATTGAGAATGAAACGCGGAATGACGCAACGTGAGTTAGCCGAAAAGGTTGGCATGTCAGGCGGCAATATCGCGGCTATCGAGTGTGGTAGGCGCTCTGAGGCTAACTTAACCTTAGCCACTGCGATAAAGCTGTGTGATGCTTTGCGTGTGCGTAATCCGCGTAAGTTACTTGATTCTGATTCTGAAACTTCTGCGGATTAAGTAATCCGCTAGGGCTATTGCGCTCTTTACGGGTGTGGTAGTCCACGAAATGTTAATGTTCAGCCGATATGATCGGCGTAAGAGTAAGGAGGTGGCATAGTTGCCGGGAATAAGCAGGTT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATTGCTCACGCGGTGCGTGGATTGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 193698-189521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABNND010000002.1 Bifidobacterium longum subsp. infantis strain BI-G201 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193697 29 100.0 32 ............................. TCTCCGAGCACCTGCTGGGTCACCTCCAGTTC 193636 29 100.0 32 ............................. GCCGCGCAGGTCTACCACCTGATCAAGGAAAA 193575 29 100.0 32 ............................. GACGGCGTGTGGGGCACGTTCAACGTTCGCGG 193514 29 100.0 32 ............................. AACGCGGCAAAACAGAAAGCAACAGAAACGAT 193453 29 100.0 32 ............................. GCCATCGATAAGGCCCTGACACAAGTGCAAGG 193392 29 100.0 32 ............................. GCATCGGCATCGCCCAATGGAGTTTCAGCCGC 193331 29 100.0 32 ............................. GAGCCCGCGTGGTAGCCGCGCACGTAGAAGTT 193270 29 100.0 32 ............................. ATGTTCGTCCACCTTGTCGGAGGTCTGCATGG 193209 29 100.0 32 ............................. GCGCGCGCCGCCAGTCTTGACGGGATGTATTA 193148 29 100.0 32 ............................. GGGCCGCCATCAACAGCGGCGACCGATACGCG 193087 29 100.0 32 ............................. CACAGACACCATAAAATCATCAGACGTAACAG 193026 29 100.0 32 ............................. TACGGGCCAGATCGGACGCCCCGCCATATGAC 192965 29 100.0 32 ............................. AAGCGTAACAGGCAGAGGCATGTGAAAGCCCG 192904 29 100.0 32 ............................. TCGAAGGCTCGGCATGGTATGACGCATGGGTC 192843 29 100.0 32 ............................. GTCGCCTGGCTTGTGGCCATGCTGCTGGTGCC 192782 29 100.0 32 ............................. CCGTCTCGCATGTCCAGTGGCGTGGCGTCATT 192721 29 100.0 32 ............................. GAATGACCATGGACGATATCACATGGATAGGT 192660 29 100.0 32 ............................. GACAAGGTACGCGAACTTATGGCCAAGCCCCT 192599 29 100.0 32 ............................. AAGCCCCATTGGCCGTCAGGTTGGATGTAGCT 192538 29 100.0 32 ............................. TACAGGTTGTCGCCCTGCCAGAGTATCCATGC 192477 29 100.0 32 ............................. ACCATGGGAAAAATTTCACACAGGGCACACCC 192416 29 100.0 32 ............................. AACGGCAGCCAGCTGAGGCCGGGCGGCGCGAC 192355 29 100.0 32 ............................. ACACGATGCCATGATGGACGTTCCCTCCTTCC 192294 29 96.6 32 ............................T GCGTCCTGGCTTTTGATTGCCTTGATGTCGTC 192233 29 100.0 32 ............................. GCGTGGAGCTGGTGGGCTTTGCGCTGGCTCCA 192172 29 100.0 32 ............................. TCGATTCGATGGCCCGACCGTCAGGCAAGTCG 192111 29 100.0 32 ............................. ATATCCAGTCGGACAATCTCACCATCCGGGAA 192050 29 100.0 32 ............................. ATGGCGAACAGATTGCCAAAAGCGTGCGCCAG 191989 29 96.6 32 ............................T GTGGCCGCACTGTCATTGGAGATGGTCGTATC 191928 29 100.0 32 ............................. ACCGTCTCCAAGCCGGTGTCCGGCGTCGCCGG 191867 29 100.0 32 ............................. GCCGACGAGGCGGTCGCCAAGGGCGAGCAGAT 191806 29 100.0 32 ............................. GGCGAAACCCCAATGGACGCAACGGTTGAGAG 191745 29 100.0 32 ............................. TTCGTGTACTCGCAGTCGCGCATAACGATGGT 191684 29 100.0 32 ............................. AGGGGCCGTGAAATCAGCCGCAACATGGCGTC 191623 29 100.0 32 ............................. GCCGGAAGCGCCGCGAACCCCGCCACCCCGAG 191562 29 100.0 32 ............................. TATCTGTGCCGTGTCTCCGACTGCGTGTTCGA 191501 29 100.0 32 ............................. TCGGAGGCCCCGCCGTCGCGGGGGCTCACGTC 191440 29 100.0 32 ............................. CCACTACAGTGGAACAGACTGCCAATGGCCTT 191379 29 100.0 32 ............................. ACTTTTGGTAAATGATTGGTTGACTATGGTCG 191318 29 100.0 32 ............................. GTATCCCGCTGTTGCGGAATATCGACATCATG 191257 29 100.0 32 ............................. CGCCTTTGCGAATGTCGTAGACATGAGCGGCC 191196 29 100.0 32 ............................. GCCATGACCTAGATGACCGAGACGATACCCGT 191135 29 100.0 32 ............................. GGGCACCAAACCCGCGACCCGCGATCCGAGGG 191074 29 100.0 32 ............................. TGCGAGGAGCTTTGGCTTCGAGCAGTTCGACT 191013 29 100.0 32 ............................. TGCAGCATGGACATGTACGGCATGAGTATACA 190952 29 100.0 32 ............................. GCATGTACGACAAAGCCATCGACATCGACTGC 190891 29 100.0 32 ............................. GACGGGTCCCCGAACGATGTGATCGGCGAAAC 190830 29 100.0 32 ............................. ACCTCGGTGCGGTACGCGGCTTCGGTCATGCC 190769 29 100.0 32 ............................. GCCAAGGCCGACTATGATGCCAAGCTCGCCGA 190708 29 100.0 32 ............................. TCTTCACGCGGCAACGCGCAAGGTTGGAGCGT 190647 29 100.0 32 ............................. CCTGCGCCACTCTGACGCATTGGCACATAGAT 190586 29 100.0 32 ............................. CGGGTGCCGTCCCACGTCAGCACCTCGACCAC 190525 29 100.0 32 ............................. GGTGGATGATGCAGACGTACACGTATGCCTCC 190464 29 100.0 32 ............................. GGCGTGGCCGCGGTGCGGTTCGTCGTCGACGG 190403 29 100.0 32 ............................. CAGATCGACAAGCTGCGCGACGAGGTGAAGGA 190342 29 100.0 32 ............................. GCGTTGGCGTCGGCGGATGTCGCCAATTCGAA 190281 29 100.0 32 ............................. TCTTCAAACCCGCGATCTCATGCTGCAGTATC 190220 29 100.0 32 ............................. GAACCAGACCCGATACTCGACGACCCGGAGGA 190159 29 100.0 32 ............................. GACGGCATGGAGATGCGCCCACTGGATAACGT 190098 29 100.0 32 ............................. TAGGCGACCGCACCCTGCGAGAGCTTCGACTG 190037 29 96.6 32 ...................T......... CGGTCAAGGTGCTGGACGGGCGTCCGAACGGA 189976 29 100.0 32 ............................. ACGCCGCCTTCCGGGATTTCGAACCTGTCGGA 189915 29 93.1 32 ................T...A........ GCATACCGGTTCGGCTCCGACGACGGCGAGAC 189854 29 100.0 32 ............................. CCGGCATCCGACTGGACCACCGACGCGGAGAG 189793 29 100.0 32 ............................. TACACAGGCACGCGCATGAGATCTCCCACCAC 189732 29 100.0 32 ............................. GATGTAGATGCGGTCTGATGCTGTGAGCTTGA 189671 29 100.0 32 ............................. GACGGCAAGGTCATCGACACCGAACGGAACGA 189610 29 100.0 32 ............................. GACGCGCCGTTCCTGACGCCCAGATTCAGTCC 189549 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 69 29 99.8 32 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : ATAGGGCAATCGAGCAAACAAGCAGAAGCATAGGGGCTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTAACGCGTTGGCTGTTTGAGATATCCCCTGGTGTCTATGTAGGCAAAGCTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATCAGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGACTTCAGAACACATGGGCAAGAATGGGAGCCAGTGGATTATGATGGATTAAAGCTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAAGCAGGAACAATAGCACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : TCGGTTATCTTCGTGGCCGACCTGTCCGCGTCGTTTGCCCCTGTATTTAGTCAAGTCGGTGTTTTGGGTTTGGTCATGTAGTTTTTTCGGGTTTGGTCATGGGGCGTGCCGGCCGGGTTGGTTGGTTATTGGGGTTGGTTTTTGCCGAACATGAGCGCCTCGCCGATGCGGTGGCTGGGCCGGTGAATTCGATGAGCCGTCCGTGGTGGACGATGCGGTCGATGATCGCGGCGGCGAGTTTGTCGTCGGCGAAGACCGTGCCCCATTTGCTGAACTCGATGTTCGTGGTGAAGATGATGCTGCGTCTCTCGTACGAGCTGGCGATGACTTGGTAGAGCAGGCGGGCGCCGTCGATGTCGAAGGGCACGTAGCCGAATTCGTCGAGGATGAGCAGGTCGGCTTTGGAGATGTCCTTGAGCAGGTTGTCGAGGTCGCCGTCGCGTTTGGCCTTGCCCAGTTGGAGCATGAGGCCGGCGGTGGGAAGAAACCTGACGTCCATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //