Array 1 31800-32667 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXBW01000019.1 Pseudomonas aeruginosa strain JYH11 IPC1222_19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31800 28 100.0 32 ............................ AACTGCTGGATAGCTGCGTAGCTCAGATTGGA 31860 28 100.0 32 ............................ CCAGGCGCAGAACGCGCTCAACGAGGCGCGCC 31920 28 100.0 32 ............................ TACGCGTTGATGGTGATTTCTTCGAGGCGCCG 31980 28 100.0 32 ............................ AACTCGCTGAAGTCGGAACCCCTGAGTTTCGA 32040 28 100.0 32 ............................ TCGCGGGTCCGCTCCAGGCGGCCCAGTTCGGC 32100 28 100.0 32 ............................ TTCCGAATGAAGACGGCATAAACGAAGACGGG 32160 28 100.0 32 ............................ GACCAGGTTGACCAGCATGGCCGGCATCGACA 32220 28 100.0 32 ............................ ACAAGGATCACCTCGAAACCCCGCGCGACCAG 32280 28 100.0 32 ............................ TGACACGCAGCCTCAGCGCTCTTGTGCCTATC 32340 28 100.0 32 ............................ ATGCATAGCGCGTCGATCCGCGGCAGCTTCAC 32400 28 96.4 32 ......................G..... TGCGCGCCGAGGGCGAAGACCTCGAGCAGAGC 32460 28 100.0 32 ............................ TACAACAGCCAGGCGCGGGGCGTGATTGAGCG 32520 28 100.0 32 ............................ TGGTGAAGCTCAGGGAGGCCTATCCGGATTTC 32580 28 100.0 32 ............................ TACAACTGGGCCATCAAGAGCGCCAACGACTA 32640 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCCGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 42239-41192 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXBW01000019.1 Pseudomonas aeruginosa strain JYH11 IPC1222_19.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 42238 28 100.0 32 ............................ TCCAGCTTTCGCTGTGAGATGGGTGATAGATG 42178 28 100.0 31 ............................ TCCAGAAGTAGTTTTTTGGTCATGGTTATGC 42119 28 100.0 32 ............................ AAAACCCTGCTTGGGGGCTGACATGTCTGAAG 42059 28 100.0 32 ............................ ATCAACCTCTAAAAGCGCTCTTTGTTCGGCGC 41999 28 100.0 32 ............................ TCTTTCCGGAGTTCGTCGAAGTCGATCATGAC 41939 28 100.0 32 ............................ GTCCTGGACTACGAGCACCAGACCCTAAAGAA 41879 28 100.0 32 ............................ ACAAACGCCTTCCAGGCGCGCTGGCGTACCGG 41819 28 100.0 32 ............................ TTCGATAAAGTGGCAACTCTGATCCCGGAAGA 41759 28 100.0 32 ............................ TTGGCAGTGATGCGTACCTGACTGGCCGCACG 41699 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 41639 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 41579 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 41519 28 100.0 32 ............................ GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 41459 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 41399 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 41339 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 41279 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 41219 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAAGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGATTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //