Array 1 1158105-1157105 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJTW01000012.1 Listeria monocytogenes strain CFSAN002281 PROKKA_contig000012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1158104 29 93.1 35 ..........T...T.............. GACATTAATTTTATTGCTTTATCACTGAACTCAGC 1158040 29 93.1 37 ..........T...T.............. GTAGTTTGTGACCGTTTAAAAACATAATTTGAAAAAC 1157974 29 96.6 36 ..............T.............. TTACCCGTTTCATCATTTCCAAGCGTTGCATCAATG 1157909 29 100.0 37 ............................. TCTGTATAATAAGAAGTACGTTTTGCGACTGGTGCCA 1157843 29 93.1 36 ..............T...A.......... AAAACAACTAAAAGACCGCCTACTATTTATACTCCT 1157778 29 93.1 36 ..............T...A.......... TTTAACGTTGGCCCAACATTTTTATCTGAGAAGGGG 1157713 29 93.1 35 ..............T...A.......... TCTTTTAACCTAGCTCTTATCAATGTTTGAGTAAC 1157649 29 93.1 36 A..............C............. GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 1157584 29 93.1 35 ..........A...T.............. ATTTACGCAAGAACTGGAACTATTAAAGCCGCTAT 1157520 29 93.1 36 .........G....T.............. AAAGGTAATACGAATTTATCTGTTAGTTGAAAAATC 1157455 29 100.0 34 ............................. GTGTACTCTAATGCCAAATTTAATTCCTCCTATT 1157392 29 100.0 36 ............................. TCGACATAACACATATATTTAAAATCATTAAAACTA 1157327 29 93.1 36 ..........A...T.............. AATTGTTTGGCTAAAGCGTCAGAATAAGATGTTGTG 1157262 29 96.6 36 ..............T.............. AAGGCAGTTAAGTAAGCAGCGACAGGGAACGGAAAT 1157197 29 100.0 35 ............................. GGAATCACGGACAGTCAGGCGAAGATAACTAAACT 1157133 29 79.3 0 ......A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 16 29 94.4 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACTATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGTAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAGGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACT # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 430233-431195 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJTW01000008.1 Listeria monocytogenes strain CFSAN002281 PROKKA_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 430233 36 100.0 30 .................................... GATTTACTAGAACACAAAATTACAAAGTGA 430299 36 100.0 30 .................................... TAGTTGCCATCGTAGTAATAAAACGCTTAG 430365 36 100.0 30 .................................... TTGGACTACGGACTTTTCTAGTTCGGACTG 430431 36 100.0 30 .................................... TTTTAATAGAAATGCGTGGCACTGTGGCGA 430497 36 100.0 30 .................................... CCCTGCAAATCAGAATTAAACTGAATAGCG 430563 36 100.0 30 .................................... ACTGGACGGGGCATTAATTGCACTGTAACG 430629 36 100.0 30 .................................... TAAGACTGGTATACCAAAGTCAACGCTTTC 430695 36 100.0 30 .................................... TCTTAACACGGATTATTTATTAACGGTACT 430761 36 100.0 30 .................................... AACCTCTGATGTAGCTTGTTTTTAACTGTT 430827 36 100.0 30 .................................... TAAATTCATACCCTTAACCAGTTTGATCCT 430893 36 100.0 30 .................................... TTGTTGCTTTGATCCAATCGTCACCATGAA 430959 36 100.0 30 .................................... GCTATTGTTGTCTGCGAGCGCCGTTGTGGT 431025 36 100.0 30 .................................... TGCGATGAGAGAAGCTTTTCCGGATAACTT 431091 36 100.0 30 .................................... CGAAAGTGATTTTGGTATCTCTGACAGTGG 431157 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [431182,431188,431191] ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGTGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGACACGATTAAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAAAAATGAAAACCGATATAACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //