Array 1 114769-114999 **** Predicted by CRISPRDetect 2.4 *** >NC_015913.1 Candidatus Arthromitus sp. SFB-mouse-Japan, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 114769 32 100.0 35 ................................ GAGGATAAAGGAGTTGGCAATTTACATAGTGCATC 114836 32 100.0 33 ................................ TACGTAGTTCTATAACTTTACCAATTATGTGTA 114901 32 100.0 35 ................................ ATATCTAATATTTTAGCTAACTCTAACTGAGTCAG 114968 32 90.6 0 .............T................GG | ========== ====== ====== ====== ================================ =================================== ================== 4 32 97.7 35 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Left flank : TACGTTATTGGATACGGATGATAAAGAAAAAGAAATAAACTTGATAAAATATTTGAATAAAGAAATGTTTAAAGAGCATCATCTTTATGATCATATAGTACCTATTTATAATACTCCTAATTTAGAAAGTGTTTTTGAAGAAATTGGTCATGTATTTAAGAATAAAGGCGAGGCAAGAAAAAGAGAGTATAAAGATTTATTGAAACCATATCCAACCCCTAAACTTGCTCGGAATTATTTAAAAGATTTATCGGGAAAATTTGAAAAGAGCAAAAACACTAATCTTAATCATGTTATTAATTTTCTCCTTAATATATAACCCTTAAATAATTGCGAAATATAAGCTTACATTAAATTTATAAGTGCTTCGCGAAGCTATATTAATACTTGATTGTAGTAGAATACTTGGTATTGCTATTCATAGATGAATTATGTAGAATATTAGTGTTCGCAAAAATAGTATGTCTATTTATGATTAGCAGCTGTTTTTAAATTTAACG # Right flank : GTGCCAGACATATAATAAAACCCCACTTGAAATTAATCAGGTGGGGTTTTAAAATCTCCGTCTAAGTTCTACGACCTTTCCGATTATGTGTATAGGTTTATCTGCAATGTCATTTTTATCGTAGTACATAGGCTCATATCTAGGATTTAACGACACAAGGCTTATACCGTCCTTGTGTTTTATTATTTTTTTACACGTTGCCTCGTCACCATTAACGCAGACTATAGCTATGTCTCCAGAGTTAACGTCTTGCTGTTTCCTGACTATTACGACATCTCCAGCATCCATTGTGGGAGACATCGAATCACCCTTGATTACGAGAGCAAAATACTCTCCTTGAGATGCAAGTTTAGGTGATATCTCTTCCCAACCGATAATTTCTTCAATCGCCGTTATGGGTATACCAGCTATAACAGTACCTAGTATGGGTATTTTAATAGCTTTATTGGATTGATCAGATCTGGAATCATTTATTATATCTCCTTTTTTGATTTAATTTT # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 116771-117067 **** Predicted by CRISPRDetect 2.4 *** >NC_015913.1 Candidatus Arthromitus sp. SFB-mouse-Japan, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 116771 32 100.0 34 ................................ TTATTTGTCCAAATTCTAAGTTGTCAAATATTTT 116837 32 100.0 33 ................................ TAGTAGGCTTGTCCTCCTTACTTTTAAACTCCC 116902 32 93.8 35 ...........TA................... TAAGATTTTTTATTGATGTGTACATAATCACCCCT 116969 32 100.0 35 ................................ CTTTATAATGGATTTGCTTTATGAGTTATTTAGAT 117036 32 93.8 0 ..............................GG | ========== ====== ====== ====== ================================ =================================== ================== 5 32 97.5 34 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Left flank : CCATCTTATAGATATTCATCAAGAGTTTTAAATTTTATCGTAGGATTGATACAAAAAAATCCTAACAATATTAAAGAAGTCTTAAAGAATAAAATAAAAAAATAAGCTAACCCCAGGGGCAAAGGAATTCTTGGTTTAATTTATTAAATTAAACCTACTCCTATTTAGGAACCCAGCCTTATCCATCCCAAGTTAGCTTACATTTATATAATATGTACATATCGTGTATATTATTCATATACACTTACATTGTACAATAAATAATTTATAAAATCAATATTTTGTAGGTAAAAATCTGTTTAACTAGGCTTATTTAAGCTGGTTATTTTACTCGGAAATATAAGCTTACATTAAATTTATAAGTGCTTCGCGAAGCTATATTAATACTTGATTGTAGTAGAATAATTGGTATTGCTATTCATAGATGAATTATGTAGAATATTAGTGTTCGCAAAAATGGTGTGTCTATTTATGATTAGCAGCTGTTTTTAAATTTAACG # Right flank : GTGTCATACATATAATAAAAACCACTTGAAATTAATCGAGTGGTTTTTAAAATCTCCGTCTAAGTTCTACGACTTTACCAATTATGTGTATAGGTTTGCTTACAATGTCATTTTTATCATAGTACATAGGCTCATATCTAGGATTTAACGACACAAGGCTTATACCGTCCTTGTGTTTTATTATTTTTTTACATGTTGCTTCATCACCATTAACGCAAACTATAGCTATGTCTCCAGAGTTAACGTCTTGCTGTTTCCTGACTATTACGACATCTCCAGCATCCATTGTGGGAGACATGGAGTCTCCTTTAATTTTTAACGCAAAGTACTCTCCTTGAGATGCAAGTTTAGGTGATATCTCTTCCCATCCGATAATCTCCTCAATCGCCGATATTGGGATACCCGCTATTACGGTGCCTAGTATGGGTATTTTTACGCAGGCTTGTACGTTTAGACCAAGACCATTTTTATATGATATTACTTTAGTAGAACTGGTAACT # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 745286-746184 **** Predicted by CRISPRDetect 2.4 *** >NC_015913.1 Candidatus Arthromitus sp. SFB-mouse-Japan, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 745286 32 100.0 34 ................................ TCAAGTCCAATAAAATTACCATTAGAATCAAAAG 745352 32 100.0 35 ................................ TGGGGAATTGTATTCAGTTGAATCATCTGCATATT 745419 32 100.0 33 ................................ TTTCAATCAATAAATTTTCCAGCTTTTCGAAAT 745484 32 100.0 35 ................................ CATCATATATTTACTAGTTTTTCCAACTCTTAAAC 745551 32 100.0 35 ................................ AAACTCATATGTATTATCATTAAACGCTCTTATAC 745618 32 100.0 35 ................................ TAAGTATATTAGACAACCATTTAATTATACAAAAG 745685 32 100.0 35 ................................ AAAAATATATGTATCGTCATCAAACATCAACAAGT 745752 32 100.0 34 ................................ TTTAGTTTGGATATATGATTTAATAGCTCCTATT 745818 32 100.0 34 ................................ TTCATCTATACAAGATAAAATTTTATTTTCTATT 745884 32 100.0 36 ................................ ATTAAGAGGTGTCGATGCTTGAGTTAAATAAGATAT 745952 32 100.0 35 ................................ TATGGTGGCTTGATAGGCTCCAACACAAGTAAAAA 746019 32 100.0 34 ................................ AAAGTGTTTTGTAACTATGATATAGATGTTAAAA 746085 32 100.0 35 ................................ GTATAAATCTGCCCTAATTAAAAATCTTATAGTTG 746152 32 96.9 0 ...............................A | G [746181] ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.8 35 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Left flank : GAATATCCTCCATATTTAATGAAGTAGTGAGGTGATTCAATGCTTATTTTAGTTACATATGATGTGGGATTGAATTTTGATGATGGCGCAAAAAGACTTAGAAAAGTATCAAAAATTTGTGAGAATTATGGGATTAGAGTTCAAAATTCTGTTTTTGAATGTGTAGTTGATAATTTACAATTTGAGATGCTTAAGTCAGATATAGATAAAGTTATAGATAAAGAACGAGATAGTGTAAGATATTATAATTTAGGTAATTCTGGAAGAAAAAAGGTAATTCATATAGGTAATAAACATTCCATTGATGTTGAAGATGTTATTATAATTTGATTGCGAAGTATAAGCTTACATTAAATTTATAAGTGCTTCGCGAAGCTATATTAATACTTGATTGTAGCAGAATAATTGGTATTGATATTTATAGATAAATTATGTAGAATATTAGTGTTCGCATAAGTAATATGTCTATTTATGATTATCAGCTATTTTTAAATTTAACG # Right flank : ATTAGCTTAAAATAGTTACGAATTATTTGGTATAGATCCGTTGAGATAAACGGTTCTATAGGAGGAATAATATGGATAAAAAAATAAAGTATTATCTTGATAGAGGCATGGATTATGATATGGCTAAATATTTTGCAACAGCTGAAAGAACAATTATATAAGTTATTCCAAATAATGATTATACATTGACTCTTAAATTTGATAATGATGAGATACGGAAATATGATTGCAATGATTTAATAGAAAAAGGAACTGTATTTGAATTTTTAAGTGATTATGATAACTTTAAAAGAGTATATCTGGATGAAAGTAACGTAGTATCTTGGGATAAAGATTCAAATATTGATAGTAATTTAAATTGGAGTAATAAAGTTGATTTAAGTTCTGACACTTTGTATGTTAAAAGTATTCCTCAAGATCTGGGCAAAATGAAATTGTAGACTATTTTTATAATCAGTTATACTTTGAACTCTGAAAATTACTTGGAAATGTAAATAGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //